Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g173 and HP15_p187g174 are separated by 15 nucleotides HP15_p187g174 and HP15_p187g175 are separated by 195 nucleotides HP15_p187g175 and HP15_p187g176 are separated by 148 nucleotides
HP15_p187g173: HP15_p187g173 - protein containing diguanylate cyclase, predicted domains, at 179,267 to 181,339
_p187g173
HP15_p187g174: HP15_p187g174 - protein containing Type IV pilus assembly PilZ domain, at 181,355 to 181,906
_p187g174
HP15_p187g175: HP15_p187g175 - conserved hypothetical protein, at 182,102 to 182,698
_p187g175
HP15_p187g176: HP15_p187g176 - conserved hypothetical protein, at 182,847 to 184,196
_p187g176
Position (kb) 182
183 Strain fitness (log2 ratio) -2
-1
0
1
2 at 181.145 kb on - strand at 181.215 kb on + strand at 181.259 kb on + strand at 181.283 kb on - strand at 181.285 kb on + strand at 181.285 kb on + strand at 181.285 kb on + strand at 181.293 kb on - strand at 181.293 kb on - strand at 181.343 kb on + strand at 181.428 kb on - strand, within HP15_p187g174 at 181.465 kb on - strand, within HP15_p187g174 at 181.471 kb on + strand, within HP15_p187g174 at 181.484 kb on + strand, within HP15_p187g174 at 181.501 kb on + strand, within HP15_p187g174 at 181.547 kb on + strand, within HP15_p187g174 at 181.547 kb on + strand, within HP15_p187g174 at 181.555 kb on - strand, within HP15_p187g174 at 181.555 kb on - strand, within HP15_p187g174 at 181.567 kb on + strand, within HP15_p187g174 at 181.570 kb on - strand, within HP15_p187g174 at 181.575 kb on + strand, within HP15_p187g174 at 181.667 kb on + strand, within HP15_p187g174 at 181.685 kb on - strand, within HP15_p187g174 at 181.699 kb on - strand, within HP15_p187g174 at 181.699 kb on - strand, within HP15_p187g174 at 181.717 kb on + strand, within HP15_p187g174 at 181.726 kb on - strand, within HP15_p187g174 at 181.906 kb on - strand at 181.999 kb on + strand at 182.007 kb on - strand at 182.059 kb on + strand at 182.069 kb on + strand at 182.069 kb on + strand at 182.077 kb on - strand at 182.078 kb on + strand at 182.078 kb on + strand at 182.083 kb on + strand at 182.086 kb on - strand at 182.088 kb on + strand at 182.088 kb on + strand at 182.088 kb on + strand at 182.091 kb on - strand at 182.091 kb on - strand at 182.096 kb on - strand at 182.096 kb on - strand at 182.096 kb on - strand at 182.098 kb on - strand at 182.100 kb on + strand at 182.136 kb on + strand at 182.210 kb on + strand, within HP15_p187g175 at 182.210 kb on + strand, within HP15_p187g175 at 182.251 kb on - strand, within HP15_p187g175 at 182.497 kb on + strand, within HP15_p187g175 at 182.572 kb on + strand, within HP15_p187g175 at 182.578 kb on + strand, within HP15_p187g175 at 182.714 kb on + strand at 182.722 kb on - strand at 182.906 kb on + strand at 182.906 kb on + strand at 182.914 kb on - strand at 182.914 kb on - strand at 182.914 kb on - strand at 182.914 kb on - strand at 182.914 kb on - strand at 182.924 kb on - strand at 182.937 kb on - strand at 182.969 kb on + strand at 182.983 kb on - strand, within HP15_p187g176 at 183.010 kb on + strand, within HP15_p187g176 at 183.010 kb on - strand, within HP15_p187g176 at 183.011 kb on + strand, within HP15_p187g176 at 183.011 kb on + strand, within HP15_p187g176 at 183.054 kb on + strand, within HP15_p187g176 at 183.054 kb on + strand, within HP15_p187g176 at 183.059 kb on + strand, within HP15_p187g176 at 183.067 kb on - strand, within HP15_p187g176 at 183.072 kb on + strand, within HP15_p187g176 at 183.101 kb on - strand, within HP15_p187g176 at 183.149 kb on + strand, within HP15_p187g176 at 183.220 kb on + strand, within HP15_p187g176 at 183.220 kb on + strand, within HP15_p187g176 at 183.233 kb on - strand, within HP15_p187g176 at 183.269 kb on + strand, within HP15_p187g176 at 183.271 kb on + strand, within HP15_p187g176 at 183.271 kb on + strand, within HP15_p187g176 at 183.271 kb on + strand, within HP15_p187g176 at 183.277 kb on - strand, within HP15_p187g176 at 183.314 kb on - strand, within HP15_p187g176 at 183.320 kb on + strand, within HP15_p187g176 at 183.320 kb on + strand, within HP15_p187g176 at 183.328 kb on - strand, within HP15_p187g176 at 183.337 kb on - strand, within HP15_p187g176 at 183.380 kb on + strand, within HP15_p187g176 at 183.416 kb on + strand, within HP15_p187g176 at 183.416 kb on + strand, within HP15_p187g176 at 183.416 kb on + strand, within HP15_p187g176 at 183.424 kb on - strand, within HP15_p187g176 at 183.453 kb on - strand, within HP15_p187g176 at 183.468 kb on - strand, within HP15_p187g176 at 183.503 kb on - strand, within HP15_p187g176 at 183.534 kb on + strand, within HP15_p187g176 at 183.534 kb on + strand, within HP15_p187g176 at 183.582 kb on + strand, within HP15_p187g176 at 183.582 kb on - strand, within HP15_p187g176 at 183.592 kb on - strand, within HP15_p187g176 at 183.592 kb on - strand, within HP15_p187g176 at 183.638 kb on + strand, within HP15_p187g176 at 183.663 kb on + strand, within HP15_p187g176
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 181,145 - -0.3 181,215 + +0.3 181,259 + -1.8 181,283 - -0.2 181,285 + +0.5 181,285 + -0.7 181,285 + -1.3 181,293 - +1.0 181,293 - -0.4 181,343 + +0.2 181,428 - HP15_p187g174 0.13 +1.0 181,465 - HP15_p187g174 0.20 -0.3 181,471 + HP15_p187g174 0.21 +0.9 181,484 + HP15_p187g174 0.23 +0.7 181,501 + HP15_p187g174 0.26 -0.6 181,547 + HP15_p187g174 0.35 +0.4 181,547 + HP15_p187g174 0.35 +0.6 181,555 - HP15_p187g174 0.36 -0.6 181,555 - HP15_p187g174 0.36 +0.8 181,567 + HP15_p187g174 0.38 -0.8 181,570 - HP15_p187g174 0.39 +0.1 181,575 + HP15_p187g174 0.40 +0.2 181,667 + HP15_p187g174 0.57 -0.2 181,685 - HP15_p187g174 0.60 +0.8 181,699 - HP15_p187g174 0.62 -0.2 181,699 - HP15_p187g174 0.62 -0.6 181,717 + HP15_p187g174 0.66 +0.3 181,726 - HP15_p187g174 0.67 +0.2 181,906 - -0.2 181,999 + -0.6 182,007 - +0.3 182,059 + -0.4 182,069 + +1.8 182,069 + +0.0 182,077 - -0.1 182,078 + +0.1 182,078 + -0.7 182,083 + +0.4 182,086 - -0.0 182,088 + -0.2 182,088 + -0.2 182,088 + -0.4 182,091 - +0.1 182,091 - -0.2 182,096 - +0.5 182,096 - +0.2 182,096 - +0.1 182,098 - -0.8 182,100 + +0.2 182,136 + -0.8 182,210 + HP15_p187g175 0.18 -0.6 182,210 + HP15_p187g175 0.18 -1.1 182,251 - HP15_p187g175 0.25 +0.5 182,497 + HP15_p187g175 0.66 -0.8 182,572 + HP15_p187g175 0.79 -0.7 182,578 + HP15_p187g175 0.80 -2.3 182,714 + -0.3 182,722 - -1.0 182,906 + -0.6 182,906 + -1.1 182,914 - -0.8 182,914 - +0.2 182,914 - -2.3 182,914 - -1.3 182,914 - -1.4 182,924 - -1.3 182,937 - +0.7 182,969 + -0.8 182,983 - HP15_p187g176 0.10 -0.1 183,010 + HP15_p187g176 0.12 -1.0 183,010 - HP15_p187g176 0.12 -0.6 183,011 + HP15_p187g176 0.12 -0.5 183,011 + HP15_p187g176 0.12 +0.0 183,054 + HP15_p187g176 0.15 -0.8 183,054 + HP15_p187g176 0.15 -0.5 183,059 + HP15_p187g176 0.16 -0.3 183,067 - HP15_p187g176 0.16 +1.6 183,072 + HP15_p187g176 0.17 -0.7 183,101 - HP15_p187g176 0.19 -1.3 183,149 + HP15_p187g176 0.22 -2.6 183,220 + HP15_p187g176 0.28 -0.2 183,220 + HP15_p187g176 0.28 -1.4 183,233 - HP15_p187g176 0.29 -1.2 183,269 + HP15_p187g176 0.31 -0.8 183,271 + HP15_p187g176 0.31 -0.3 183,271 + HP15_p187g176 0.31 -0.8 183,271 + HP15_p187g176 0.31 -0.9 183,277 - HP15_p187g176 0.32 -0.6 183,314 - HP15_p187g176 0.35 -1.0 183,320 + HP15_p187g176 0.35 +0.2 183,320 + HP15_p187g176 0.35 -1.2 183,328 - HP15_p187g176 0.36 -1.4 183,337 - HP15_p187g176 0.36 -0.2 183,380 + HP15_p187g176 0.39 -0.8 183,416 + HP15_p187g176 0.42 -0.6 183,416 + HP15_p187g176 0.42 -1.5 183,416 + HP15_p187g176 0.42 -0.1 183,424 - HP15_p187g176 0.43 +1.2 183,453 - HP15_p187g176 0.45 -0.9 183,468 - HP15_p187g176 0.46 -0.5 183,503 - HP15_p187g176 0.49 -0.8 183,534 + HP15_p187g176 0.51 -0.2 183,534 + HP15_p187g176 0.51 -1.3 183,582 + HP15_p187g176 0.54 +0.2 183,582 - HP15_p187g176 0.54 -0.3 183,592 - HP15_p187g176 0.55 -0.5 183,592 - HP15_p187g176 0.55 -0.8 183,638 + HP15_p187g176 0.59 +0.3 183,663 + HP15_p187g176 0.60 -2.3
Or see this region's nucleotide sequence