Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_43 and HP15_44 are separated by 179 nucleotides HP15_44 and HP15_45 are separated by 71 nucleotides HP15_45 and HP15_46 are separated by 225 nucleotides
HP15_43: HP15_43 - crotonobetaine/carnitine-CoA ligase, at 47,091 to 48,722
_43
HP15_44: HP15_44 - DitK protein, at 48,902 to 49,600
_44
HP15_45: HP15_45 - hypothetical protein, at 49,672 to 49,779
_45
HP15_46: HP15_46 - amidohydrolase 2, at 50,005 to 51,081
_46
Position (kb)
48
49
50 Strain fitness (log2 ratio)
-1
0
1
2 at 47.906 kb on + strand, within HP15_43 at 47.909 kb on - strand, within HP15_43 at 47.929 kb on - strand, within HP15_43 at 48.002 kb on - strand, within HP15_43 at 48.022 kb on - strand, within HP15_43 at 48.022 kb on - strand, within HP15_43 at 48.061 kb on - strand, within HP15_43 at 48.109 kb on + strand, within HP15_43 at 48.152 kb on + strand, within HP15_43 at 48.152 kb on + strand, within HP15_43 at 48.160 kb on - strand, within HP15_43 at 48.183 kb on + strand, within HP15_43 at 48.191 kb on - strand, within HP15_43 at 48.341 kb on - strand, within HP15_43 at 48.459 kb on - strand, within HP15_43 at 48.485 kb on - strand, within HP15_43 at 48.575 kb on - strand at 48.657 kb on - strand at 48.662 kb on - strand at 48.662 kb on - strand at 48.681 kb on - strand at 48.876 kb on + strand at 48.889 kb on + strand at 48.892 kb on - strand at 48.959 kb on - strand at 48.971 kb on - strand at 48.979 kb on + strand, within HP15_44 at 48.999 kb on - strand, within HP15_44 at 49.047 kb on + strand, within HP15_44 at 49.279 kb on - strand, within HP15_44 at 49.342 kb on - strand, within HP15_44 at 49.385 kb on - strand, within HP15_44 at 49.542 kb on + strand at 49.569 kb on - strand at 49.763 kb on - strand, within HP15_45 at 49.864 kb on + strand at 50.133 kb on - strand, within HP15_46 at 50.133 kb on - strand, within HP15_46 at 50.133 kb on - strand, within HP15_46 at 50.133 kb on - strand, within HP15_46 at 50.138 kb on + strand, within HP15_46 at 50.157 kb on + strand, within HP15_46 at 50.159 kb on - strand, within HP15_46 at 50.161 kb on - strand, within HP15_46 at 50.185 kb on - strand, within HP15_46 at 50.255 kb on + strand, within HP15_46 at 50.255 kb on + strand, within HP15_46 at 50.274 kb on + strand, within HP15_46 at 50.297 kb on + strand, within HP15_46 at 50.304 kb on + strand, within HP15_46 at 50.312 kb on - strand, within HP15_46 at 50.422 kb on + strand, within HP15_46 at 50.488 kb on - strand, within HP15_46 at 50.588 kb on + strand, within HP15_46 at 50.596 kb on - strand, within HP15_46
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 47,906 + HP15_43 0.50 +0.5 47,909 - HP15_43 0.50 +0.1 47,929 - HP15_43 0.51 +2.3 48,002 - HP15_43 0.56 +0.1 48,022 - HP15_43 0.57 -1.1 48,022 - HP15_43 0.57 -0.2 48,061 - HP15_43 0.59 -0.1 48,109 + HP15_43 0.62 +0.8 48,152 + HP15_43 0.65 -0.2 48,152 + HP15_43 0.65 -0.8 48,160 - HP15_43 0.66 +0.2 48,183 + HP15_43 0.67 +1.0 48,191 - HP15_43 0.67 +0.8 48,341 - HP15_43 0.77 -0.8 48,459 - HP15_43 0.84 -0.5 48,485 - HP15_43 0.85 -0.6 48,575 - -0.3 48,657 - +0.4 48,662 - +0.5 48,662 - +0.2 48,681 - +1.1 48,876 + -1.1 48,889 + -0.3 48,892 - -0.3 48,959 - -0.3 48,971 - -0.3 48,979 + HP15_44 0.11 -1.0 48,999 - HP15_44 0.14 -0.1 49,047 + HP15_44 0.21 +1.3 49,279 - HP15_44 0.54 -1.5 49,342 - HP15_44 0.63 -0.3 49,385 - HP15_44 0.69 -1.3 49,542 + -0.3 49,569 - -0.1 49,763 - HP15_45 0.84 -0.3 49,864 + -0.1 50,133 - HP15_46 0.12 -0.1 50,133 - HP15_46 0.12 -0.7 50,133 - HP15_46 0.12 +0.1 50,133 - HP15_46 0.12 +0.0 50,138 + HP15_46 0.12 +0.1 50,157 + HP15_46 0.14 -0.0 50,159 - HP15_46 0.14 +0.6 50,161 - HP15_46 0.14 +0.1 50,185 - HP15_46 0.17 +0.1 50,255 + HP15_46 0.23 -0.0 50,255 + HP15_46 0.23 +0.1 50,274 + HP15_46 0.25 -0.4 50,297 + HP15_46 0.27 +0.3 50,304 + HP15_46 0.28 -0.2 50,312 - HP15_46 0.29 +1.0 50,422 + HP15_46 0.39 +0.9 50,488 - HP15_46 0.45 -1.1 50,588 + HP15_46 0.54 +0.5 50,596 - HP15_46 0.55 +0.2
Or see this region's nucleotide sequence