Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g96

Experiment: L-Proline (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_p187g94 and HP15_p187g95 are separated by 2 nucleotidesHP15_p187g95 and HP15_p187g96 are separated by 154 nucleotidesHP15_p187g96 and HP15_p187g97 are separated by 12 nucleotides HP15_p187g94: HP15_p187g94 - radical SAM domain protein, at 89,956 to 91,000 _p187g94 HP15_p187g95: HP15_p187g95 - hypothetical protein, at 91,003 to 91,122 _p187g95 HP15_p187g96: HP15_p187g96 - hypothetical protein, at 91,277 to 91,423 _p187g96 HP15_p187g97: HP15_p187g97 - sodium/solute symporter-like protein, at 91,436 to 92,797 _p187g97 Position (kb) 91 92Strain fitness (log2 ratio) -2 -1 0 1 2at 90.292 kb on + strand, within HP15_p187g94at 90.305 kb on + strand, within HP15_p187g94at 90.395 kb on + strand, within HP15_p187g94at 90.395 kb on + strand, within HP15_p187g94at 90.400 kb on + strand, within HP15_p187g94at 90.426 kb on + strand, within HP15_p187g94at 90.444 kb on + strand, within HP15_p187g94at 90.474 kb on - strand, within HP15_p187g94at 90.499 kb on + strand, within HP15_p187g94at 90.499 kb on - strand, within HP15_p187g94at 90.596 kb on - strand, within HP15_p187g94at 90.596 kb on - strand, within HP15_p187g94at 90.596 kb on - strand, within HP15_p187g94at 90.596 kb on - strand, within HP15_p187g94at 90.689 kb on + strand, within HP15_p187g94at 90.697 kb on - strand, within HP15_p187g94at 90.713 kb on + strand, within HP15_p187g94at 90.715 kb on + strand, within HP15_p187g94at 90.727 kb on - strand, within HP15_p187g94at 90.744 kb on + strand, within HP15_p187g94at 90.762 kb on + strand, within HP15_p187g94at 90.763 kb on - strand, within HP15_p187g94at 90.763 kb on - strand, within HP15_p187g94at 90.765 kb on + strand, within HP15_p187g94at 90.808 kb on - strand, within HP15_p187g94at 90.813 kb on + strand, within HP15_p187g94at 90.813 kb on + strand, within HP15_p187g94at 90.821 kb on - strand, within HP15_p187g94at 90.832 kb on + strand, within HP15_p187g94at 90.862 kb on - strand, within HP15_p187g94at 90.879 kb on - strand, within HP15_p187g94at 90.916 kb on + strandat 90.916 kb on + strandat 90.916 kb on + strandat 90.916 kb on + strandat 90.916 kb on + strandat 90.916 kb on + strandat 90.918 kb on + strandat 90.918 kb on + strandat 90.918 kb on + strandat 90.924 kb on - strandat 90.924 kb on - strandat 90.924 kb on - strandat 90.924 kb on - strandat 90.924 kb on - strandat 90.924 kb on - strandat 90.924 kb on - strandat 90.924 kb on - strandat 90.926 kb on - strandat 90.926 kb on - strandat 90.960 kb on - strandat 91.293 kb on + strand, within HP15_p187g96at 91.376 kb on + strand, within HP15_p187g96at 91.397 kb on - strand, within HP15_p187g96at 91.459 kb on + strandat 91.459 kb on + strandat 91.459 kb on + strandat 91.459 kb on + strandat 91.485 kb on + strandat 91.485 kb on + strandat 91.485 kb on - strandat 91.490 kb on + strandat 91.498 kb on - strandat 91.498 kb on - strandat 91.553 kb on - strandat 91.553 kb on - strandat 91.555 kb on + strandat 91.555 kb on + strandat 91.558 kb on - strandat 91.563 kb on - strandat 91.576 kb on - strand, within HP15_p187g97at 91.576 kb on - strand, within HP15_p187g97at 91.667 kb on + strand, within HP15_p187g97at 91.672 kb on + strand, within HP15_p187g97at 91.801 kb on - strand, within HP15_p187g97at 91.856 kb on + strand, within HP15_p187g97at 91.884 kb on + strand, within HP15_p187g97at 91.922 kb on + strand, within HP15_p187g97at 91.933 kb on + strand, within HP15_p187g97at 91.941 kb on - strand, within HP15_p187g97at 91.951 kb on - strand, within HP15_p187g97at 91.953 kb on + strand, within HP15_p187g97at 91.977 kb on + strand, within HP15_p187g97at 91.990 kb on - strand, within HP15_p187g97at 91.990 kb on - strand, within HP15_p187g97at 92.088 kb on - strand, within HP15_p187g97at 92.207 kb on - strand, within HP15_p187g97at 92.224 kb on - strand, within HP15_p187g97at 92.231 kb on - strand, within HP15_p187g97at 92.269 kb on + strand, within HP15_p187g97at 92.277 kb on - strand, within HP15_p187g97at 92.277 kb on - strand, within HP15_p187g97at 92.277 kb on - strand, within HP15_p187g97at 92.277 kb on - strand, within HP15_p187g97at 92.293 kb on - strand, within HP15_p187g97at 92.298 kb on - strand, within HP15_p187g97at 92.306 kb on + strand, within HP15_p187g97at 92.307 kb on + strand, within HP15_p187g97

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
remove
90,292 + HP15_p187g94 0.32 +0.6
90,305 + HP15_p187g94 0.33 +0.8
90,395 + HP15_p187g94 0.42 +0.1
90,395 + HP15_p187g94 0.42 +0.4
90,400 + HP15_p187g94 0.42 -0.3
90,426 + HP15_p187g94 0.45 -0.0
90,444 + HP15_p187g94 0.47 +0.1
90,474 - HP15_p187g94 0.50 -0.2
90,499 + HP15_p187g94 0.52 -0.1
90,499 - HP15_p187g94 0.52 -0.1
90,596 - HP15_p187g94 0.61 +0.1
90,596 - HP15_p187g94 0.61 -0.0
90,596 - HP15_p187g94 0.61 +0.2
90,596 - HP15_p187g94 0.61 -0.3
90,689 + HP15_p187g94 0.70 -0.8
90,697 - HP15_p187g94 0.71 +0.0
90,713 + HP15_p187g94 0.72 -0.1
90,715 + HP15_p187g94 0.73 +0.1
90,727 - HP15_p187g94 0.74 +0.4
90,744 + HP15_p187g94 0.75 -0.1
90,762 + HP15_p187g94 0.77 -0.1
90,763 - HP15_p187g94 0.77 -0.2
90,763 - HP15_p187g94 0.77 -0.0
90,765 + HP15_p187g94 0.77 +0.8
90,808 - HP15_p187g94 0.82 +0.2
90,813 + HP15_p187g94 0.82 +0.1
90,813 + HP15_p187g94 0.82 +0.2
90,821 - HP15_p187g94 0.83 -0.2
90,832 + HP15_p187g94 0.84 -0.2
90,862 - HP15_p187g94 0.87 -0.3
90,879 - HP15_p187g94 0.88 +0.1
90,916 + +0.3
90,916 + -0.2
90,916 + -0.2
90,916 + +1.2
90,916 + +0.3
90,916 + +0.4
90,918 + +0.2
90,918 + +0.3
90,918 + +0.3
90,924 - -1.8
90,924 - +0.6
90,924 - +0.4
90,924 - +0.4
90,924 - -0.5
90,924 - +1.8
90,924 - -0.3
90,924 - +1.2
90,926 - -0.2
90,926 - -0.0
90,960 - +0.1
91,293 + HP15_p187g96 0.11 +1.2
91,376 + HP15_p187g96 0.67 -1.0
91,397 - HP15_p187g96 0.82 -0.6
91,459 + +1.0
91,459 + +0.2
91,459 + -2.1
91,459 + +0.1
91,485 + -0.3
91,485 + +0.2
91,485 - -0.4
91,490 + +0.5
91,498 - +0.4
91,498 - +1.0
91,553 - +0.5
91,553 - -0.7
91,555 + +0.6
91,555 + -1.0
91,558 - -0.2
91,563 - +0.5
91,576 - HP15_p187g97 0.10 -0.2
91,576 - HP15_p187g97 0.10 -0.4
91,667 + HP15_p187g97 0.17 +0.4
91,672 + HP15_p187g97 0.17 -0.3
91,801 - HP15_p187g97 0.27 -0.6
91,856 + HP15_p187g97 0.31 -0.3
91,884 + HP15_p187g97 0.33 +0.2
91,922 + HP15_p187g97 0.36 +0.0
91,933 + HP15_p187g97 0.36 +0.1
91,941 - HP15_p187g97 0.37 +1.2
91,951 - HP15_p187g97 0.38 +0.7
91,953 + HP15_p187g97 0.38 -0.3
91,977 + HP15_p187g97 0.40 -0.3
91,990 - HP15_p187g97 0.41 +0.0
91,990 - HP15_p187g97 0.41 +0.7
92,088 - HP15_p187g97 0.48 +0.2
92,207 - HP15_p187g97 0.57 -0.4
92,224 - HP15_p187g97 0.58 -0.5
92,231 - HP15_p187g97 0.58 -0.0
92,269 + HP15_p187g97 0.61 +0.3
92,277 - HP15_p187g97 0.62 +0.0
92,277 - HP15_p187g97 0.62 -0.1
92,277 - HP15_p187g97 0.62 +0.3
92,277 - HP15_p187g97 0.62 -0.3
92,293 - HP15_p187g97 0.63 -0.1
92,298 - HP15_p187g97 0.63 +0.5
92,306 + HP15_p187g97 0.64 +1.0
92,307 + HP15_p187g97 0.64 +1.2

Or see this region's nucleotide sequence