Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g27

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g25 and HP15_p187g26 are separated by 277 nucleotidesHP15_p187g26 and HP15_p187g27 are separated by 124 nucleotidesHP15_p187g27 and HP15_p187g28 are separated by 129 nucleotidesHP15_p187g28 and HP15_p187g29 are separated by 34 nucleotidesHP15_p187g29 and HP15_p187g30 are separated by 125 nucleotides HP15_p187g25: HP15_p187g25 - membrane protein, at 20,626 to 20,931 _p187g25 HP15_p187g26: HP15_p187g26 - hypothetical protein, at 21,209 to 21,370 _p187g26 HP15_p187g27: HP15_p187g27 - hypothetical protein, at 21,495 to 21,662 _p187g27 HP15_p187g28: HP15_p187g28 - hypothetical protein, at 21,792 to 21,929 _p187g28 HP15_p187g29: HP15_p187g29 - hypothetical protein, at 21,964 to 22,341 _p187g29 HP15_p187g30: HP15_p187g30 - conserved hypothetical protein, membrane, at 22,467 to 22,688 _p187g30 Position (kb) 21 22Strain fitness (log2 ratio) -1 0 1 2at 20.505 kb on - strandat 20.585 kb on - strandat 20.624 kb on - strandat 20.770 kb on + strand, within HP15_p187g25at 20.770 kb on + strand, within HP15_p187g25at 20.825 kb on + strand, within HP15_p187g25at 20.862 kb on + strand, within HP15_p187g25at 20.948 kb on - strandat 21.025 kb on - strandat 21.026 kb on + strandat 21.051 kb on + strandat 21.141 kb on + strandat 21.172 kb on + strandat 21.175 kb on - strandat 21.180 kb on - strandat 21.196 kb on - strandat 21.263 kb on - strand, within HP15_p187g26at 21.265 kb on + strand, within HP15_p187g26at 21.293 kb on + strand, within HP15_p187g26at 21.311 kb on - strand, within HP15_p187g26at 21.351 kb on + strand, within HP15_p187g26at 21.356 kb on + strandat 21.364 kb on - strandat 21.382 kb on - strandat 21.431 kb on - strandat 21.518 kb on - strand, within HP15_p187g27at 21.551 kb on + strand, within HP15_p187g27at 21.606 kb on + strand, within HP15_p187g27at 21.626 kb on + strand, within HP15_p187g27at 21.626 kb on + strand, within HP15_p187g27at 21.646 kb on + strandat 21.646 kb on + strandat 21.646 kb on + strandat 21.664 kb on - strandat 21.690 kb on + strandat 21.698 kb on - strandat 21.713 kb on + strandat 21.713 kb on + strandat 21.721 kb on - strandat 21.731 kb on - strandat 21.758 kb on + strandat 21.829 kb on - strand, within HP15_p187g28at 21.829 kb on - strand, within HP15_p187g28at 21.847 kb on + strand, within HP15_p187g28at 21.847 kb on + strand, within HP15_p187g28at 21.847 kb on + strand, within HP15_p187g28at 21.855 kb on - strand, within HP15_p187g28at 21.866 kb on - strand, within HP15_p187g28at 21.928 kb on + strandat 21.928 kb on + strandat 21.999 kb on + strandat 21.999 kb on + strandat 22.007 kb on - strand, within HP15_p187g29at 22.007 kb on - strand, within HP15_p187g29at 22.021 kb on - strand, within HP15_p187g29at 22.021 kb on - strand, within HP15_p187g29at 22.057 kb on - strand, within HP15_p187g29at 22.120 kb on + strand, within HP15_p187g29at 22.223 kb on + strand, within HP15_p187g29at 22.223 kb on + strand, within HP15_p187g29at 22.225 kb on + strand, within HP15_p187g29at 22.231 kb on - strand, within HP15_p187g29at 22.260 kb on + strand, within HP15_p187g29at 22.260 kb on + strand, within HP15_p187g29at 22.260 kb on + strand, within HP15_p187g29at 22.268 kb on - strand, within HP15_p187g29at 22.268 kb on - strand, within HP15_p187g29at 22.268 kb on - strand, within HP15_p187g29at 22.313 kb on + strandat 22.313 kb on + strandat 22.313 kb on + strandat 22.321 kb on - strandat 22.321 kb on - strandat 22.321 kb on - strandat 22.321 kb on - strandat 22.321 kb on - strandat 22.326 kb on - strandat 22.331 kb on - strandat 22.413 kb on - strandat 22.413 kb on - strandat 22.478 kb on - strandat 22.483 kb on + strandat 22.525 kb on - strand, within HP15_p187g30at 22.525 kb on - strand, within HP15_p187g30at 22.617 kb on + strand, within HP15_p187g30at 22.617 kb on + strand, within HP15_p187g30at 22.632 kb on + strand, within HP15_p187g30at 22.632 kb on + strand, within HP15_p187g30at 22.632 kb on + strand, within HP15_p187g30at 22.640 kb on - strand, within HP15_p187g30at 22.651 kb on + strand, within HP15_p187g30at 22.659 kb on - strand, within HP15_p187g30

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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20,505 - +0.8
20,585 - -0.0
20,624 - +0.6
20,770 + HP15_p187g25 0.47 +0.3
20,770 + HP15_p187g25 0.47 -0.1
20,825 + HP15_p187g25 0.65 -0.2
20,862 + HP15_p187g25 0.77 +0.2
20,948 - +0.0
21,025 - -0.0
21,026 + +0.7
21,051 + +0.2
21,141 + -0.6
21,172 + +0.3
21,175 - +1.4
21,180 - +0.0
21,196 - -0.5
21,263 - HP15_p187g26 0.33 -0.2
21,265 + HP15_p187g26 0.35 -0.1
21,293 + HP15_p187g26 0.52 -0.1
21,311 - HP15_p187g26 0.63 +1.2
21,351 + HP15_p187g26 0.88 +0.4
21,356 + +2.2
21,364 - +0.1
21,382 - -1.2
21,431 - -0.6
21,518 - HP15_p187g27 0.14 -0.6
21,551 + HP15_p187g27 0.33 -0.2
21,606 + HP15_p187g27 0.66 -0.3
21,626 + HP15_p187g27 0.78 -0.2
21,626 + HP15_p187g27 0.78 -0.3
21,646 + +0.8
21,646 + +0.2
21,646 + +0.5
21,664 - +1.3
21,690 + -0.3
21,698 - -0.3
21,713 + -1.1
21,713 + +0.2
21,721 - +0.6
21,731 - +0.4
21,758 + +0.7
21,829 - HP15_p187g28 0.27 +0.8
21,829 - HP15_p187g28 0.27 -0.6
21,847 + HP15_p187g28 0.40 -0.4
21,847 + HP15_p187g28 0.40 +0.1
21,847 + HP15_p187g28 0.40 +0.1
21,855 - HP15_p187g28 0.46 +0.3
21,866 - HP15_p187g28 0.54 +0.9
21,928 + +0.6
21,928 + +0.1
21,999 + +0.1
21,999 + +0.0
22,007 - HP15_p187g29 0.11 -0.9
22,007 - HP15_p187g29 0.11 -0.5
22,021 - HP15_p187g29 0.15 -0.2
22,021 - HP15_p187g29 0.15 +0.5
22,057 - HP15_p187g29 0.25 -0.2
22,120 + HP15_p187g29 0.41 -0.2
22,223 + HP15_p187g29 0.69 +0.4
22,223 + HP15_p187g29 0.69 -0.4
22,225 + HP15_p187g29 0.69 +0.6
22,231 - HP15_p187g29 0.71 +0.8
22,260 + HP15_p187g29 0.78 +0.2
22,260 + HP15_p187g29 0.78 +0.2
22,260 + HP15_p187g29 0.78 +0.5
22,268 - HP15_p187g29 0.80 +0.8
22,268 - HP15_p187g29 0.80 +0.1
22,268 - HP15_p187g29 0.80 -0.5
22,313 + -1.0
22,313 + -0.0
22,313 + +1.3
22,321 - +0.2
22,321 - +0.4
22,321 - -0.3
22,321 - +0.8
22,321 - +0.8
22,326 - -0.4
22,331 - -0.6
22,413 - +0.3
22,413 - +0.2
22,478 - -0.3
22,483 + +0.1
22,525 - HP15_p187g30 0.26 +0.8
22,525 - HP15_p187g30 0.26 -0.8
22,617 + HP15_p187g30 0.68 -0.3
22,617 + HP15_p187g30 0.68 -0.1
22,632 + HP15_p187g30 0.74 -0.1
22,632 + HP15_p187g30 0.74 -0.3
22,632 + HP15_p187g30 0.74 +1.6
22,640 - HP15_p187g30 0.78 +0.7
22,651 + HP15_p187g30 0.83 +0.1
22,659 - HP15_p187g30 0.86 -0.3

Or see this region's nucleotide sequence