Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g15 and HP15_p187g16 overlap by 1 nucleotides HP15_p187g16 and HP15_p187g17 are separated by 23 nucleotides HP15_p187g17 and HP15_p187g18 are separated by 80 nucleotides HP15_p187g18 and HP15_p187g19 are separated by 509 nucleotides
HP15_p187g15: HP15_p187g15 - serine phosphatase RsbU-like protein, regulator of sigma, at 14,632 to 15,051
_p187g15
HP15_p187g16: HP15_p187g16 - anti-sigma F factor antagonist, at 15,051 to 15,416
_p187g16
HP15_p187g17: HP15_p187g17 - conserved hypothetical protein, at 15,440 to 15,838
_p187g17
HP15_p187g18: HP15_p187g18 - hypothetical protein, at 15,919 to 16,161
_p187g18
HP15_p187g19: HP15_p187g19 - deoxyribodipyrimidine photolyase, at 16,671 to 18,188
_p187g19
Position (kb)
15
16
17 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 14.992 kb on + strand, within HP15_p187g15 at 15.002 kb on - strand, within HP15_p187g15 at 15.083 kb on + strand at 15.096 kb on + strand, within HP15_p187g16 at 15.113 kb on - strand, within HP15_p187g16 at 15.140 kb on + strand, within HP15_p187g16 at 15.175 kb on + strand, within HP15_p187g16 at 15.228 kb on + strand, within HP15_p187g16 at 15.266 kb on + strand, within HP15_p187g16 at 15.274 kb on - strand, within HP15_p187g16 at 15.274 kb on - strand, within HP15_p187g16 at 15.336 kb on - strand, within HP15_p187g16 at 15.411 kb on + strand at 15.419 kb on - strand at 15.432 kb on + strand at 15.433 kb on - strand at 15.463 kb on - strand at 15.467 kb on + strand at 15.545 kb on + strand, within HP15_p187g17 at 15.610 kb on - strand, within HP15_p187g17 at 15.610 kb on - strand, within HP15_p187g17 at 15.617 kb on + strand, within HP15_p187g17 at 15.631 kb on - strand, within HP15_p187g17 at 15.639 kb on - strand, within HP15_p187g17 at 15.653 kb on - strand, within HP15_p187g17 at 15.713 kb on + strand, within HP15_p187g17 at 15.713 kb on + strand, within HP15_p187g17 at 15.715 kb on + strand, within HP15_p187g17 at 15.741 kb on - strand, within HP15_p187g17 at 15.882 kb on + strand at 15.961 kb on - strand, within HP15_p187g18 at 15.979 kb on - strand, within HP15_p187g18 at 15.979 kb on - strand, within HP15_p187g18 at 15.981 kb on + strand, within HP15_p187g18 at 16.029 kb on + strand, within HP15_p187g18 at 16.029 kb on + strand, within HP15_p187g18 at 16.029 kb on + strand, within HP15_p187g18 at 16.029 kb on + strand, within HP15_p187g18 at 16.029 kb on + strand, within HP15_p187g18 at 16.037 kb on - strand, within HP15_p187g18 at 16.037 kb on - strand, within HP15_p187g18 at 16.037 kb on - strand, within HP15_p187g18 at 16.037 kb on - strand, within HP15_p187g18 at 16.041 kb on + strand, within HP15_p187g18 at 16.041 kb on + strand, within HP15_p187g18 at 16.049 kb on - strand, within HP15_p187g18 at 16.051 kb on + strand, within HP15_p187g18 at 16.081 kb on - strand, within HP15_p187g18 at 16.127 kb on - strand, within HP15_p187g18 at 16.186 kb on - strand at 16.245 kb on + strand at 16.253 kb on - strand at 16.253 kb on - strand at 16.270 kb on + strand at 16.271 kb on + strand at 16.276 kb on + strand at 16.359 kb on + strand at 16.388 kb on + strand at 16.396 kb on - strand at 16.410 kb on - strand at 16.472 kb on - strand at 16.539 kb on - strand at 16.569 kb on - strand at 16.597 kb on + strand at 16.597 kb on + strand at 16.612 kb on + strand at 16.612 kb on + strand at 16.620 kb on - strand at 16.674 kb on - strand at 16.711 kb on + strand at 16.740 kb on - strand at 16.761 kb on + strand at 16.761 kb on + strand at 16.811 kb on - strand at 16.906 kb on + strand, within HP15_p187g19 at 16.909 kb on - strand, within HP15_p187g19 at 16.955 kb on + strand, within HP15_p187g19 at 16.955 kb on + strand, within HP15_p187g19 at 16.963 kb on - strand, within HP15_p187g19 at 16.967 kb on + strand, within HP15_p187g19 at 16.975 kb on - strand, within HP15_p187g19 at 16.978 kb on - strand, within HP15_p187g19 at 16.994 kb on - strand, within HP15_p187g19 at 17.035 kb on + strand, within HP15_p187g19 at 17.035 kb on + strand, within HP15_p187g19 at 17.043 kb on - strand, within HP15_p187g19 at 17.043 kb on - strand, within HP15_p187g19 at 17.064 kb on + strand, within HP15_p187g19 at 17.069 kb on + strand, within HP15_p187g19 at 17.069 kb on + strand at 17.069 kb on + strand, within HP15_p187g19 at 17.077 kb on - strand, within HP15_p187g19 at 17.077 kb on - strand, within HP15_p187g19 at 17.077 kb on - strand, within HP15_p187g19 at 17.078 kb on + strand, within HP15_p187g19 at 17.117 kb on - strand, within HP15_p187g19
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 14,992 + HP15_p187g15 0.86 -0.8 15,002 - HP15_p187g15 0.88 -0.8 15,083 + +0.5 15,096 + HP15_p187g16 0.12 +0.8 15,113 - HP15_p187g16 0.17 +0.7 15,140 + HP15_p187g16 0.24 +0.1 15,175 + HP15_p187g16 0.34 +0.1 15,228 + HP15_p187g16 0.48 +0.5 15,266 + HP15_p187g16 0.59 -1.6 15,274 - HP15_p187g16 0.61 -0.5 15,274 - HP15_p187g16 0.61 -0.2 15,336 - HP15_p187g16 0.78 +0.1 15,411 + +0.6 15,419 - -0.8 15,432 + +0.1 15,433 - +0.2 15,463 - +0.0 15,467 + +0.2 15,545 + HP15_p187g17 0.26 -0.4 15,610 - HP15_p187g17 0.43 +1.5 15,610 - HP15_p187g17 0.43 -1.8 15,617 + HP15_p187g17 0.44 -0.2 15,631 - HP15_p187g17 0.48 +0.2 15,639 - HP15_p187g17 0.50 -0.2 15,653 - HP15_p187g17 0.53 -0.5 15,713 + HP15_p187g17 0.68 +0.3 15,713 + HP15_p187g17 0.68 -0.3 15,715 + HP15_p187g17 0.69 -0.2 15,741 - HP15_p187g17 0.75 +0.1 15,882 + +0.0 15,961 - HP15_p187g18 0.17 -0.6 15,979 - HP15_p187g18 0.25 -0.9 15,979 - HP15_p187g18 0.25 -0.4 15,981 + HP15_p187g18 0.26 -0.7 16,029 + HP15_p187g18 0.45 -0.3 16,029 + HP15_p187g18 0.45 -1.3 16,029 + HP15_p187g18 0.45 -1.1 16,029 + HP15_p187g18 0.45 -0.8 16,029 + HP15_p187g18 0.45 -0.3 16,037 - HP15_p187g18 0.49 -0.7 16,037 - HP15_p187g18 0.49 -1.5 16,037 - HP15_p187g18 0.49 -0.8 16,037 - HP15_p187g18 0.49 -0.2 16,041 + HP15_p187g18 0.50 -2.1 16,041 + HP15_p187g18 0.50 -1.3 16,049 - HP15_p187g18 0.53 +0.1 16,051 + HP15_p187g18 0.54 +0.4 16,081 - HP15_p187g18 0.67 -0.8 16,127 - HP15_p187g18 0.86 -0.3 16,186 - +0.8 16,245 + -0.5 16,253 - -0.6 16,253 - +0.6 16,270 + -1.8 16,271 + -0.3 16,276 + -0.2 16,359 + -0.3 16,388 + -0.6 16,396 - +0.3 16,410 - +0.5 16,472 - +0.2 16,539 - -0.1 16,569 - -0.0 16,597 + +2.4 16,597 + -0.8 16,612 + +0.2 16,612 + +0.0 16,620 - -0.8 16,674 - -0.3 16,711 + +0.8 16,740 - -0.2 16,761 + +0.2 16,761 + +0.1 16,811 - +0.3 16,906 + HP15_p187g19 0.15 +0.0 16,909 - HP15_p187g19 0.16 +0.6 16,955 + HP15_p187g19 0.19 -0.0 16,955 + HP15_p187g19 0.19 +0.2 16,963 - HP15_p187g19 0.19 +0.1 16,967 + HP15_p187g19 0.19 -1.5 16,975 - HP15_p187g19 0.20 +1.8 16,978 - HP15_p187g19 0.20 +0.2 16,994 - HP15_p187g19 0.21 +0.6 17,035 + HP15_p187g19 0.24 +1.0 17,035 + HP15_p187g19 0.24 -0.1 17,043 - HP15_p187g19 0.25 +1.6 17,043 - HP15_p187g19 0.25 -0.2 17,064 + HP15_p187g19 0.26 +0.0 17,069 + HP15_p187g19 0.26 -1.1 17,069 + +1.0 17,069 + HP15_p187g19 0.26 -0.2 17,077 - HP15_p187g19 0.27 +1.4 17,077 - HP15_p187g19 0.27 -1.3 17,077 - HP15_p187g19 0.27 +1.7 17,078 + HP15_p187g19 0.27 +0.5 17,117 - HP15_p187g19 0.29 +0.8
Or see this region's nucleotide sequence