Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p42g18 and HP15_p42g19 overlap by 1 nucleotides HP15_p42g19 and HP15_p42g20 overlap by 1 nucleotides HP15_p42g20 and HP15_p42g21 are separated by 348 nucleotides HP15_p42g21 and HP15_p42g22 are separated by 52 nucleotides
HP15_p42g18: HP15_p42g18 - traM-like protein, at 12,553 to 12,990
_p42g18
HP15_p42g19: HP15_p42g19 - transfer origin protein, TraL, at 12,990 to 13,715
_p42g19
HP15_p42g20: HP15_p42g20 - TraK-like protein of DNA transfer, at 13,715 to 14,146
_p42g20
HP15_p42g21: HP15_p42g21 - oriT binding protein TraJ, at 14,495 to 14,866
_p42g21
HP15_p42g22: HP15_p42g22 - TraI DNA relaxase, at 14,919 to 17,186
_p42g22
Position (kb) 13
14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 12.809 kb on - strand, within HP15_p42g18 at 12.879 kb on + strand, within HP15_p42g18 at 12.933 kb on + strand, within HP15_p42g18 at 12.933 kb on + strand, within HP15_p42g18 at 12.935 kb on + strand, within HP15_p42g18 at 12.935 kb on + strand, within HP15_p42g18 at 12.935 kb on + strand, within HP15_p42g18 at 12.935 kb on + strand, within HP15_p42g18 at 12.941 kb on - strand, within HP15_p42g18 at 12.943 kb on + strand, within HP15_p42g18 at 12.998 kb on - strand at 13.008 kb on + strand at 13.140 kb on + strand, within HP15_p42g19 at 13.244 kb on + strand, within HP15_p42g19 at 13.255 kb on + strand, within HP15_p42g19 at 13.255 kb on + strand, within HP15_p42g19 at 13.257 kb on - strand, within HP15_p42g19 at 13.295 kb on + strand, within HP15_p42g19 at 13.349 kb on + strand, within HP15_p42g19 at 13.441 kb on + strand, within HP15_p42g19 at 13.540 kb on + strand, within HP15_p42g19 at 13.565 kb on + strand, within HP15_p42g19 at 13.574 kb on + strand, within HP15_p42g19 at 13.623 kb on - strand, within HP15_p42g19 at 13.638 kb on + strand, within HP15_p42g19 at 13.764 kb on + strand, within HP15_p42g20 at 14.067 kb on + strand, within HP15_p42g20 at 14.483 kb on - strand at 14.514 kb on - strand at 14.638 kb on - strand, within HP15_p42g21 at 14.669 kb on - strand, within HP15_p42g21 at 14.671 kb on + strand, within HP15_p42g21 at 14.678 kb on + strand, within HP15_p42g21 at 14.764 kb on - strand, within HP15_p42g21 at 14.963 kb on - strand at 14.986 kb on - strand at 14.997 kb on + strand at 14.997 kb on + strand at 15.000 kb on - strand at 15.074 kb on - strand at 15.091 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 12,809 - HP15_p42g18 0.58 -0.9 12,879 + HP15_p42g18 0.74 +0.8 12,933 + HP15_p42g18 0.87 +0.3 12,933 + HP15_p42g18 0.87 -0.3 12,935 + HP15_p42g18 0.87 +0.6 12,935 + HP15_p42g18 0.87 -0.2 12,935 + HP15_p42g18 0.87 +1.1 12,935 + HP15_p42g18 0.87 -2.2 12,941 - HP15_p42g18 0.89 -0.6 12,943 + HP15_p42g18 0.89 -0.3 12,998 - -1.8 13,008 + +0.6 13,140 + HP15_p42g19 0.21 -0.4 13,244 + HP15_p42g19 0.35 +0.9 13,255 + HP15_p42g19 0.37 +0.3 13,255 + HP15_p42g19 0.37 +0.1 13,257 - HP15_p42g19 0.37 -0.4 13,295 + HP15_p42g19 0.42 +0.4 13,349 + HP15_p42g19 0.49 -0.5 13,441 + HP15_p42g19 0.62 +0.1 13,540 + HP15_p42g19 0.76 +0.1 13,565 + HP15_p42g19 0.79 +0.7 13,574 + HP15_p42g19 0.80 -0.0 13,623 - HP15_p42g19 0.87 -1.3 13,638 + HP15_p42g19 0.89 -2.8 13,764 + HP15_p42g20 0.11 -0.6 14,067 + HP15_p42g20 0.81 -0.3 14,483 - +2.3 14,514 - -1.8 14,638 - HP15_p42g21 0.38 +0.4 14,669 - HP15_p42g21 0.47 -0.1 14,671 + HP15_p42g21 0.47 +1.2 14,678 + HP15_p42g21 0.49 -0.2 14,764 - HP15_p42g21 0.72 -0.2 14,963 - +0.4 14,986 - +0.4 14,997 + +0.4 14,997 + +0.1 15,000 - -0.4 15,074 - -0.8 15,091 - -0.9
Or see this region's nucleotide sequence