Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4103 and HP15_4104 are separated by 40 nucleotides HP15_4104 and HP15_4105 are separated by 198 nucleotides HP15_4105 and HP15_4106 are separated by 30 nucleotides HP15_4106 and HP15_4107 are separated by 197 nucleotides
HP15_4103: HP15_4103 - conserved hypothetical protein, at 4,337,592 to 4,338,239
_4103
HP15_4104: HP15_4104 - conserved hypothetical protein, at 4,338,280 to 4,338,672
_4104
HP15_4105: HP15_4105 - hypothetical protein, at 4,338,871 to 4,339,170
_4105
HP15_4106: HP15_4106 - conserved hypothetical protein, secreted, at 4,339,201 to 4,339,587
_4106
HP15_4107: HP15_4107 - endonuclease 8, at 4,339,785 to 4,340,600
_4107
Position (kb) 4339
4340 Strain fitness (log2 ratio) -1
0
1 at 4338.224 kb on - strand at 4338.248 kb on - strand at 4338.258 kb on - strand at 4338.258 kb on - strand at 4338.432 kb on - strand, within HP15_4104 at 4338.447 kb on - strand, within HP15_4104 at 4338.573 kb on + strand, within HP15_4104 at 4338.689 kb on + strand at 4338.833 kb on + strand at 4338.903 kb on + strand, within HP15_4105 at 4338.974 kb on - strand, within HP15_4105 at 4339.088 kb on + strand, within HP15_4105 at 4339.164 kb on + strand at 4339.220 kb on - strand at 4339.376 kb on + strand, within HP15_4106 at 4339.388 kb on - strand, within HP15_4106 at 4339.481 kb on + strand, within HP15_4106 at 4339.489 kb on - strand, within HP15_4106 at 4339.569 kb on - strand at 4339.569 kb on - strand at 4339.574 kb on - strand at 4339.651 kb on - strand at 4339.707 kb on + strand at 4339.715 kb on - strand at 4339.715 kb on - strand at 4339.720 kb on - strand at 4339.752 kb on - strand at 4339.814 kb on + strand at 4339.853 kb on + strand at 4339.861 kb on - strand at 4339.910 kb on + strand, within HP15_4107 at 4339.910 kb on + strand, within HP15_4107 at 4339.918 kb on - strand, within HP15_4107 at 4339.944 kb on + strand, within HP15_4107 at 4339.952 kb on - strand, within HP15_4107 at 4340.003 kb on + strand, within HP15_4107 at 4340.105 kb on + strand, within HP15_4107 at 4340.151 kb on + strand, within HP15_4107 at 4340.311 kb on + strand, within HP15_4107 at 4340.431 kb on + strand, within HP15_4107 at 4340.442 kb on - strand, within HP15_4107 at 4340.502 kb on + strand, within HP15_4107 at 4340.510 kb on - strand, within HP15_4107 at 4340.562 kb on - strand at 4340.587 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 4,338,224 - -0.2 4,338,248 - +0.4 4,338,258 - -0.5 4,338,258 - +0.6 4,338,432 - HP15_4104 0.39 -0.2 4,338,447 - HP15_4104 0.42 -0.1 4,338,573 + HP15_4104 0.75 -0.4 4,338,689 + -0.6 4,338,833 + +0.3 4,338,903 + HP15_4105 0.11 +0.2 4,338,974 - HP15_4105 0.34 +0.2 4,339,088 + HP15_4105 0.72 -0.4 4,339,164 + -0.2 4,339,220 - +0.2 4,339,376 + HP15_4106 0.45 -0.5 4,339,388 - HP15_4106 0.48 -0.2 4,339,481 + HP15_4106 0.72 +0.1 4,339,489 - HP15_4106 0.74 -0.9 4,339,569 - +0.3 4,339,569 - +0.4 4,339,574 - +0.4 4,339,651 - +0.0 4,339,707 + +0.6 4,339,715 - +0.0 4,339,715 - -0.3 4,339,720 - +0.3 4,339,752 - -0.2 4,339,814 + +0.5 4,339,853 + +0.1 4,339,861 - -0.4 4,339,910 + HP15_4107 0.15 +0.5 4,339,910 + HP15_4107 0.15 -0.4 4,339,918 - HP15_4107 0.16 -1.2 4,339,944 + HP15_4107 0.19 +0.4 4,339,952 - HP15_4107 0.20 -0.3 4,340,003 + HP15_4107 0.27 +0.4 4,340,105 + HP15_4107 0.39 +1.0 4,340,151 + HP15_4107 0.45 -0.1 4,340,311 + HP15_4107 0.64 -0.1 4,340,431 + HP15_4107 0.79 +0.0 4,340,442 - HP15_4107 0.81 +0.6 4,340,502 + HP15_4107 0.88 -0.4 4,340,510 - HP15_4107 0.89 +0.3 4,340,562 - +0.4 4,340,587 - +0.9
Or see this region's nucleotide sequence