Strain Fitness in Marinobacter adhaerens HP15 around HP15_3956

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3954 and HP15_3955 overlap by 14 nucleotidesHP15_3955 and HP15_3956 overlap by 4 nucleotidesHP15_3956 and HP15_3957 are separated by 70 nucleotidesHP15_3957 and HP15_3958 are separated by 76 nucleotides HP15_3954: HP15_3954 - substrate-binding periplasmic (PBP) ABC transporter protein, at 4,185,446 to 4,186,330 _3954 HP15_3955: HP15_3955 - bacterial transport system permease protein, at 4,186,317 to 4,187,291 _3955 HP15_3956: HP15_3956 - iron compound ABC transporter, ATP-binding protein, at 4,187,288 to 4,188,055 _3956 HP15_3957: HP15_3957 - endoribonuclease L-PSP family protein, at 4,188,126 to 4,188,476 _3957 HP15_3958: HP15_3958 - rhodanese domain protein, at 4,188,553 to 4,189,401 _3958 Position (kb) 4187 4188 4189Strain fitness (log2 ratio) -3 -2 -1 0 1at 4186.302 kb on + strandat 4186.315 kb on - strandat 4186.335 kb on + strandat 4186.498 kb on + strand, within HP15_3955at 4186.538 kb on - strand, within HP15_3955at 4186.579 kb on + strand, within HP15_3955at 4186.759 kb on - strand, within HP15_3955at 4186.963 kb on + strand, within HP15_3955at 4187.101 kb on + strand, within HP15_3955at 4187.115 kb on - strand, within HP15_3955at 4187.348 kb on - strandat 4187.380 kb on + strand, within HP15_3956at 4187.380 kb on + strand, within HP15_3956at 4187.380 kb on + strand, within HP15_3956at 4187.380 kb on + strand, within HP15_3956at 4187.388 kb on - strand, within HP15_3956at 4187.388 kb on - strand, within HP15_3956at 4187.388 kb on - strand, within HP15_3956at 4187.388 kb on - strand, within HP15_3956at 4187.388 kb on - strand, within HP15_3956at 4187.388 kb on - strand, within HP15_3956at 4187.388 kb on - strand, within HP15_3956at 4187.388 kb on - strand, within HP15_3956at 4187.388 kb on - strand, within HP15_3956at 4187.390 kb on - strand, within HP15_3956at 4187.406 kb on - strand, within HP15_3956at 4187.410 kb on + strand, within HP15_3956at 4187.410 kb on + strand, within HP15_3956at 4187.411 kb on + strand, within HP15_3956at 4187.433 kb on - strand, within HP15_3956at 4187.450 kb on - strand, within HP15_3956at 4187.460 kb on - strand, within HP15_3956at 4187.481 kb on - strand, within HP15_3956at 4187.582 kb on + strand, within HP15_3956at 4187.628 kb on + strand, within HP15_3956at 4187.664 kb on - strand, within HP15_3956at 4187.698 kb on + strand, within HP15_3956at 4187.872 kb on - strand, within HP15_3956at 4187.891 kb on - strand, within HP15_3956at 4187.891 kb on - strand, within HP15_3956at 4187.951 kb on + strand, within HP15_3956at 4187.954 kb on - strand, within HP15_3956at 4188.187 kb on + strand, within HP15_3957at 4188.187 kb on + strand, within HP15_3957at 4188.202 kb on - strand, within HP15_3957at 4188.275 kb on + strand, within HP15_3957at 4188.283 kb on - strand, within HP15_3957at 4188.399 kb on + strand, within HP15_3957at 4188.698 kb on + strand, within HP15_3958at 4188.781 kb on - strand, within HP15_3958at 4188.889 kb on - strand, within HP15_3958at 4188.923 kb on + strand, within HP15_3958at 4188.944 kb on - strand, within HP15_3958at 4188.957 kb on + strand, within HP15_3958at 4188.957 kb on + strand, within HP15_3958at 4188.957 kb on + strand, within HP15_3958at 4188.957 kb on + strand, within HP15_3958

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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4,186,302 + -0.8
4,186,315 - -3.0
4,186,335 + -0.4
4,186,498 + HP15_3955 0.19 -1.8
4,186,538 - HP15_3955 0.23 -1.1
4,186,579 + HP15_3955 0.27 -0.1
4,186,759 - HP15_3955 0.45 -0.5
4,186,963 + HP15_3955 0.66 +0.3
4,187,101 + HP15_3955 0.80 -0.3
4,187,115 - HP15_3955 0.82 -0.1
4,187,348 - -0.4
4,187,380 + HP15_3956 0.12 -0.7
4,187,380 + HP15_3956 0.12 +0.1
4,187,380 + HP15_3956 0.12 -0.9
4,187,380 + HP15_3956 0.12 -1.1
4,187,388 - HP15_3956 0.13 +0.2
4,187,388 - HP15_3956 0.13 -0.6
4,187,388 - HP15_3956 0.13 +0.1
4,187,388 - HP15_3956 0.13 -0.2
4,187,388 - HP15_3956 0.13 -0.0
4,187,388 - HP15_3956 0.13 -0.2
4,187,388 - HP15_3956 0.13 -1.4
4,187,388 - HP15_3956 0.13 -0.6
4,187,388 - HP15_3956 0.13 -0.2
4,187,390 - HP15_3956 0.13 -0.7
4,187,406 - HP15_3956 0.15 -1.4
4,187,410 + HP15_3956 0.16 -1.2
4,187,410 + HP15_3956 0.16 +0.1
4,187,411 + HP15_3956 0.16 -1.1
4,187,433 - HP15_3956 0.19 -0.1
4,187,450 - HP15_3956 0.21 -0.2
4,187,460 - HP15_3956 0.22 +1.1
4,187,481 - HP15_3956 0.25 -0.8
4,187,582 + HP15_3956 0.38 -0.4
4,187,628 + HP15_3956 0.44 -0.2
4,187,664 - HP15_3956 0.49 -0.4
4,187,698 + HP15_3956 0.53 +1.3
4,187,872 - HP15_3956 0.76 -0.5
4,187,891 - HP15_3956 0.79 +0.2
4,187,891 - HP15_3956 0.79 -0.9
4,187,951 + HP15_3956 0.86 -0.2
4,187,954 - HP15_3956 0.87 -0.7
4,188,187 + HP15_3957 0.17 +0.5
4,188,187 + HP15_3957 0.17 -0.5
4,188,202 - HP15_3957 0.22 +0.8
4,188,275 + HP15_3957 0.42 -0.1
4,188,283 - HP15_3957 0.45 +0.5
4,188,399 + HP15_3957 0.78 -0.0
4,188,698 + HP15_3958 0.17 -0.4
4,188,781 - HP15_3958 0.27 -0.6
4,188,889 - HP15_3958 0.40 -0.4
4,188,923 + HP15_3958 0.44 +0.1
4,188,944 - HP15_3958 0.46 -0.1
4,188,957 + HP15_3958 0.48 -0.2
4,188,957 + HP15_3958 0.48 -1.1
4,188,957 + HP15_3958 0.48 +0.5
4,188,957 + HP15_3958 0.48 +0.3

Or see this region's nucleotide sequence