Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3822 and HP15_3823 are separated by 238 nucleotides HP15_3823 and HP15_3824 are separated by 52 nucleotides
HP15_3822: HP15_3822 - drug resistance transporter, EmrB/QacA family, at 4,048,000 to 4,049,391
_3822
HP15_3823: HP15_3823 - uncharacterized protein family UPF0016-like protein, at 4,049,630 to 4,050,199
_3823
HP15_3824: HP15_3824 - ErfK/YbiS/YcfS/YnhG family protein, at 4,050,252 to 4,051,298
_3824
Position (kb)
4049
4050
4051 Strain fitness (log2 ratio)
-2
-1
0
1 at 4048.639 kb on - strand, within HP15_3822 at 4048.672 kb on + strand, within HP15_3822 at 4048.672 kb on + strand, within HP15_3822 at 4048.699 kb on + strand, within HP15_3822 at 4048.748 kb on - strand, within HP15_3822 at 4048.796 kb on + strand, within HP15_3822 at 4048.866 kb on + strand, within HP15_3822 at 4048.874 kb on - strand, within HP15_3822 at 4048.874 kb on - strand, within HP15_3822 at 4048.875 kb on + strand, within HP15_3822 at 4048.914 kb on - strand, within HP15_3822 at 4048.914 kb on - strand, within HP15_3822 at 4048.919 kb on - strand, within HP15_3822 at 4048.923 kb on + strand, within HP15_3822 at 4048.997 kb on - strand, within HP15_3822 at 4049.018 kb on + strand, within HP15_3822 at 4049.018 kb on + strand, within HP15_3822 at 4049.023 kb on + strand, within HP15_3822 at 4049.026 kb on - strand, within HP15_3822 at 4049.028 kb on + strand, within HP15_3822 at 4049.041 kb on - strand, within HP15_3822 at 4049.073 kb on + strand, within HP15_3822 at 4049.106 kb on + strand, within HP15_3822 at 4049.111 kb on + strand, within HP15_3822 at 4049.112 kb on - strand, within HP15_3822 at 4049.114 kb on - strand, within HP15_3822 at 4049.114 kb on - strand, within HP15_3822 at 4049.116 kb on + strand, within HP15_3822 at 4049.116 kb on + strand, within HP15_3822 at 4049.119 kb on - strand, within HP15_3822 at 4049.124 kb on - strand, within HP15_3822 at 4049.124 kb on - strand, within HP15_3822 at 4049.124 kb on - strand, within HP15_3822 at 4049.124 kb on - strand, within HP15_3822 at 4049.124 kb on - strand, within HP15_3822 at 4049.213 kb on + strand, within HP15_3822 at 4049.213 kb on + strand, within HP15_3822 at 4049.249 kb on + strand, within HP15_3822 at 4049.251 kb on - strand, within HP15_3822 at 4049.294 kb on - strand at 4049.299 kb on - strand at 4049.299 kb on - strand at 4049.385 kb on + strand at 4049.385 kb on + strand at 4049.412 kb on - strand at 4049.443 kb on + strand at 4049.451 kb on - strand at 4049.525 kb on - strand at 4049.784 kb on - strand, within HP15_3823 at 4049.807 kb on + strand, within HP15_3823 at 4049.833 kb on - strand, within HP15_3823 at 4049.895 kb on - strand, within HP15_3823 at 4049.914 kb on + strand, within HP15_3823 at 4049.986 kb on + strand, within HP15_3823 at 4050.035 kb on + strand, within HP15_3823 at 4050.038 kb on - strand, within HP15_3823 at 4050.042 kb on + strand, within HP15_3823 at 4050.077 kb on - strand, within HP15_3823 at 4050.113 kb on + strand, within HP15_3823 at 4050.171 kb on + strand at 4050.171 kb on + strand at 4050.404 kb on - strand, within HP15_3824 at 4050.470 kb on + strand, within HP15_3824 at 4050.478 kb on - strand, within HP15_3824 at 4050.503 kb on + strand, within HP15_3824 at 4050.511 kb on - strand, within HP15_3824 at 4050.661 kb on - strand, within HP15_3824 at 4050.693 kb on + strand, within HP15_3824 at 4050.693 kb on + strand, within HP15_3824 at 4050.763 kb on - strand, within HP15_3824 at 4050.775 kb on - strand, within HP15_3824 at 4050.846 kb on - strand, within HP15_3824 at 4050.980 kb on + strand, within HP15_3824 at 4050.998 kb on - strand, within HP15_3824 at 4051.090 kb on + strand, within HP15_3824 at 4051.109 kb on + strand, within HP15_3824
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 4,048,639 - HP15_3822 0.46 -0.5 4,048,672 + HP15_3822 0.48 +0.2 4,048,672 + HP15_3822 0.48 -0.3 4,048,699 + HP15_3822 0.50 -0.1 4,048,748 - HP15_3822 0.54 +0.1 4,048,796 + HP15_3822 0.57 +0.2 4,048,866 + HP15_3822 0.62 +0.2 4,048,874 - HP15_3822 0.63 -0.5 4,048,874 - HP15_3822 0.63 +0.8 4,048,875 + HP15_3822 0.63 -0.0 4,048,914 - HP15_3822 0.66 +0.6 4,048,914 - HP15_3822 0.66 +0.1 4,048,919 - HP15_3822 0.66 +0.6 4,048,923 + HP15_3822 0.66 +0.5 4,048,997 - HP15_3822 0.72 -0.1 4,049,018 + HP15_3822 0.73 -0.8 4,049,018 + HP15_3822 0.73 +0.2 4,049,023 + HP15_3822 0.73 +0.6 4,049,026 - HP15_3822 0.74 +0.2 4,049,028 + HP15_3822 0.74 -0.1 4,049,041 - HP15_3822 0.75 -0.5 4,049,073 + HP15_3822 0.77 +0.2 4,049,106 + HP15_3822 0.79 -1.8 4,049,111 + HP15_3822 0.80 -0.5 4,049,112 - HP15_3822 0.80 +0.0 4,049,114 - HP15_3822 0.80 -0.1 4,049,114 - HP15_3822 0.80 -0.8 4,049,116 + HP15_3822 0.80 +0.5 4,049,116 + HP15_3822 0.80 +0.1 4,049,119 - HP15_3822 0.80 +0.2 4,049,124 - HP15_3822 0.81 +0.0 4,049,124 - HP15_3822 0.81 +0.4 4,049,124 - HP15_3822 0.81 +0.6 4,049,124 - HP15_3822 0.81 +1.2 4,049,124 - HP15_3822 0.81 -0.4 4,049,213 + HP15_3822 0.87 +0.5 4,049,213 + HP15_3822 0.87 +0.6 4,049,249 + HP15_3822 0.90 +0.2 4,049,251 - HP15_3822 0.90 +0.0 4,049,294 - +0.0 4,049,299 - +0.3 4,049,299 - -0.5 4,049,385 + -0.2 4,049,385 + +0.3 4,049,412 - -0.1 4,049,443 + -0.3 4,049,451 - -0.6 4,049,525 - +0.5 4,049,784 - HP15_3823 0.27 -0.9 4,049,807 + HP15_3823 0.31 -0.4 4,049,833 - HP15_3823 0.36 -1.2 4,049,895 - HP15_3823 0.46 -1.7 4,049,914 + HP15_3823 0.50 -0.9 4,049,986 + HP15_3823 0.62 -1.5 4,050,035 + HP15_3823 0.71 -0.1 4,050,038 - HP15_3823 0.72 -1.1 4,050,042 + HP15_3823 0.72 -1.8 4,050,077 - HP15_3823 0.78 -1.3 4,050,113 + HP15_3823 0.85 -1.0 4,050,171 + -1.1 4,050,171 + -0.8 4,050,404 - HP15_3824 0.15 -2.0 4,050,470 + HP15_3824 0.21 +0.2 4,050,478 - HP15_3824 0.22 -0.1 4,050,503 + HP15_3824 0.24 +0.3 4,050,511 - HP15_3824 0.25 +0.0 4,050,661 - HP15_3824 0.39 -0.0 4,050,693 + HP15_3824 0.42 -0.5 4,050,693 + HP15_3824 0.42 -0.2 4,050,763 - HP15_3824 0.49 -0.3 4,050,775 - HP15_3824 0.50 -1.5 4,050,846 - HP15_3824 0.57 +0.8 4,050,980 + HP15_3824 0.70 -0.4 4,050,998 - HP15_3824 0.71 -0.2 4,051,090 + HP15_3824 0.80 -0.1 4,051,109 + HP15_3824 0.82 +0.2
Or see this region's nucleotide sequence