Strain Fitness in Marinobacter adhaerens HP15 around HP15_3823

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3822 and HP15_3823 are separated by 238 nucleotidesHP15_3823 and HP15_3824 are separated by 52 nucleotides HP15_3822: HP15_3822 - drug resistance transporter, EmrB/QacA family, at 4,048,000 to 4,049,391 _3822 HP15_3823: HP15_3823 - uncharacterized protein family UPF0016-like protein, at 4,049,630 to 4,050,199 _3823 HP15_3824: HP15_3824 - ErfK/YbiS/YcfS/YnhG family protein, at 4,050,252 to 4,051,298 _3824 Position (kb) 4049 4050 4051Strain fitness (log2 ratio) -2 -1 0 1at 4048.639 kb on - strand, within HP15_3822at 4048.672 kb on + strand, within HP15_3822at 4048.672 kb on + strand, within HP15_3822at 4048.699 kb on + strand, within HP15_3822at 4048.748 kb on - strand, within HP15_3822at 4048.796 kb on + strand, within HP15_3822at 4048.866 kb on + strand, within HP15_3822at 4048.874 kb on - strand, within HP15_3822at 4048.874 kb on - strand, within HP15_3822at 4048.875 kb on + strand, within HP15_3822at 4048.914 kb on - strand, within HP15_3822at 4048.914 kb on - strand, within HP15_3822at 4048.919 kb on - strand, within HP15_3822at 4048.923 kb on + strand, within HP15_3822at 4048.997 kb on - strand, within HP15_3822at 4049.018 kb on + strand, within HP15_3822at 4049.018 kb on + strand, within HP15_3822at 4049.023 kb on + strand, within HP15_3822at 4049.026 kb on - strand, within HP15_3822at 4049.028 kb on + strand, within HP15_3822at 4049.041 kb on - strand, within HP15_3822at 4049.073 kb on + strand, within HP15_3822at 4049.106 kb on + strand, within HP15_3822at 4049.111 kb on + strand, within HP15_3822at 4049.112 kb on - strand, within HP15_3822at 4049.114 kb on - strand, within HP15_3822at 4049.114 kb on - strand, within HP15_3822at 4049.116 kb on + strand, within HP15_3822at 4049.116 kb on + strand, within HP15_3822at 4049.119 kb on - strand, within HP15_3822at 4049.124 kb on - strand, within HP15_3822at 4049.124 kb on - strand, within HP15_3822at 4049.124 kb on - strand, within HP15_3822at 4049.124 kb on - strand, within HP15_3822at 4049.124 kb on - strand, within HP15_3822at 4049.213 kb on + strand, within HP15_3822at 4049.213 kb on + strand, within HP15_3822at 4049.249 kb on + strand, within HP15_3822at 4049.251 kb on - strand, within HP15_3822at 4049.294 kb on - strandat 4049.299 kb on - strandat 4049.299 kb on - strandat 4049.385 kb on + strandat 4049.385 kb on + strandat 4049.412 kb on - strandat 4049.443 kb on + strandat 4049.451 kb on - strandat 4049.525 kb on - strandat 4049.784 kb on - strand, within HP15_3823at 4049.807 kb on + strand, within HP15_3823at 4049.833 kb on - strand, within HP15_3823at 4049.895 kb on - strand, within HP15_3823at 4049.914 kb on + strand, within HP15_3823at 4049.986 kb on + strand, within HP15_3823at 4050.035 kb on + strand, within HP15_3823at 4050.038 kb on - strand, within HP15_3823at 4050.042 kb on + strand, within HP15_3823at 4050.077 kb on - strand, within HP15_3823at 4050.113 kb on + strand, within HP15_3823at 4050.171 kb on + strandat 4050.171 kb on + strandat 4050.404 kb on - strand, within HP15_3824at 4050.470 kb on + strand, within HP15_3824at 4050.478 kb on - strand, within HP15_3824at 4050.503 kb on + strand, within HP15_3824at 4050.511 kb on - strand, within HP15_3824at 4050.661 kb on - strand, within HP15_3824at 4050.693 kb on + strand, within HP15_3824at 4050.693 kb on + strand, within HP15_3824at 4050.763 kb on - strand, within HP15_3824at 4050.775 kb on - strand, within HP15_3824at 4050.846 kb on - strand, within HP15_3824at 4050.980 kb on + strand, within HP15_3824at 4050.998 kb on - strand, within HP15_3824at 4051.090 kb on + strand, within HP15_3824at 4051.109 kb on + strand, within HP15_3824

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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4,048,639 - HP15_3822 0.46 -0.5
4,048,672 + HP15_3822 0.48 +0.2
4,048,672 + HP15_3822 0.48 -0.3
4,048,699 + HP15_3822 0.50 -0.1
4,048,748 - HP15_3822 0.54 +0.1
4,048,796 + HP15_3822 0.57 +0.2
4,048,866 + HP15_3822 0.62 +0.2
4,048,874 - HP15_3822 0.63 -0.5
4,048,874 - HP15_3822 0.63 +0.8
4,048,875 + HP15_3822 0.63 -0.0
4,048,914 - HP15_3822 0.66 +0.6
4,048,914 - HP15_3822 0.66 +0.1
4,048,919 - HP15_3822 0.66 +0.6
4,048,923 + HP15_3822 0.66 +0.5
4,048,997 - HP15_3822 0.72 -0.1
4,049,018 + HP15_3822 0.73 -0.8
4,049,018 + HP15_3822 0.73 +0.2
4,049,023 + HP15_3822 0.73 +0.6
4,049,026 - HP15_3822 0.74 +0.2
4,049,028 + HP15_3822 0.74 -0.1
4,049,041 - HP15_3822 0.75 -0.5
4,049,073 + HP15_3822 0.77 +0.2
4,049,106 + HP15_3822 0.79 -1.8
4,049,111 + HP15_3822 0.80 -0.5
4,049,112 - HP15_3822 0.80 +0.0
4,049,114 - HP15_3822 0.80 -0.1
4,049,114 - HP15_3822 0.80 -0.8
4,049,116 + HP15_3822 0.80 +0.5
4,049,116 + HP15_3822 0.80 +0.1
4,049,119 - HP15_3822 0.80 +0.2
4,049,124 - HP15_3822 0.81 +0.0
4,049,124 - HP15_3822 0.81 +0.4
4,049,124 - HP15_3822 0.81 +0.6
4,049,124 - HP15_3822 0.81 +1.2
4,049,124 - HP15_3822 0.81 -0.4
4,049,213 + HP15_3822 0.87 +0.5
4,049,213 + HP15_3822 0.87 +0.6
4,049,249 + HP15_3822 0.90 +0.2
4,049,251 - HP15_3822 0.90 +0.0
4,049,294 - +0.0
4,049,299 - +0.3
4,049,299 - -0.5
4,049,385 + -0.2
4,049,385 + +0.3
4,049,412 - -0.1
4,049,443 + -0.3
4,049,451 - -0.6
4,049,525 - +0.5
4,049,784 - HP15_3823 0.27 -0.9
4,049,807 + HP15_3823 0.31 -0.4
4,049,833 - HP15_3823 0.36 -1.2
4,049,895 - HP15_3823 0.46 -1.7
4,049,914 + HP15_3823 0.50 -0.9
4,049,986 + HP15_3823 0.62 -1.5
4,050,035 + HP15_3823 0.71 -0.1
4,050,038 - HP15_3823 0.72 -1.1
4,050,042 + HP15_3823 0.72 -1.8
4,050,077 - HP15_3823 0.78 -1.3
4,050,113 + HP15_3823 0.85 -1.0
4,050,171 + -1.1
4,050,171 + -0.8
4,050,404 - HP15_3824 0.15 -2.0
4,050,470 + HP15_3824 0.21 +0.2
4,050,478 - HP15_3824 0.22 -0.1
4,050,503 + HP15_3824 0.24 +0.3
4,050,511 - HP15_3824 0.25 +0.0
4,050,661 - HP15_3824 0.39 -0.0
4,050,693 + HP15_3824 0.42 -0.5
4,050,693 + HP15_3824 0.42 -0.2
4,050,763 - HP15_3824 0.49 -0.3
4,050,775 - HP15_3824 0.50 -1.5
4,050,846 - HP15_3824 0.57 +0.8
4,050,980 + HP15_3824 0.70 -0.4
4,050,998 - HP15_3824 0.71 -0.2
4,051,090 + HP15_3824 0.80 -0.1
4,051,109 + HP15_3824 0.82 +0.2

Or see this region's nucleotide sequence