Strain Fitness in Marinobacter adhaerens HP15 around HP15_3613

Experiment: L-Proline (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3612 and HP15_3613 are separated by 155 nucleotidesHP15_3613 and HP15_3614 are separated by 143 nucleotides HP15_3612: HP15_3612 - monooxygenase, flavin-binding family protein, at 3,808,302 to 3,809,828 _3612 HP15_3613: HP15_3613 - conserved hypothetical protein, membrane, at 3,809,984 to 3,810,532 _3613 HP15_3614: HP15_3614 - histone deacetylase superfamily, at 3,810,676 to 3,811,710 _3614 Position (kb) 3809 3810 3811Strain fitness (log2 ratio) -3 -2 -1 0 1at 3809.001 kb on + strand, within HP15_3612at 3809.003 kb on + strand, within HP15_3612at 3809.009 kb on - strand, within HP15_3612at 3809.158 kb on - strand, within HP15_3612at 3809.178 kb on - strand, within HP15_3612at 3809.297 kb on - strand, within HP15_3612at 3809.312 kb on - strand, within HP15_3612at 3809.332 kb on + strand, within HP15_3612at 3809.339 kb on - strand, within HP15_3612at 3809.382 kb on + strand, within HP15_3612at 3809.416 kb on + strand, within HP15_3612at 3809.416 kb on + strand, within HP15_3612at 3809.436 kb on + strand, within HP15_3612at 3809.455 kb on + strand, within HP15_3612at 3809.460 kb on + strand, within HP15_3612at 3809.460 kb on + strand, within HP15_3612at 3809.468 kb on - strand, within HP15_3612at 3809.468 kb on - strand, within HP15_3612at 3809.475 kb on - strand, within HP15_3612at 3809.492 kb on + strand, within HP15_3612at 3809.500 kb on - strand, within HP15_3612at 3809.500 kb on - strand, within HP15_3612at 3809.552 kb on + strand, within HP15_3612at 3809.611 kb on - strand, within HP15_3612at 3809.687 kb on + strandat 3809.695 kb on - strandat 3809.716 kb on + strandat 3809.824 kb on + strandat 3809.832 kb on - strandat 3810.059 kb on - strand, within HP15_3613at 3810.061 kb on + strand, within HP15_3613at 3810.122 kb on + strand, within HP15_3613at 3810.137 kb on + strand, within HP15_3613at 3810.165 kb on - strand, within HP15_3613at 3810.264 kb on - strand, within HP15_3613at 3810.285 kb on - strand, within HP15_3613at 3810.338 kb on + strand, within HP15_3613at 3810.343 kb on + strand, within HP15_3613at 3810.346 kb on - strand, within HP15_3613at 3810.346 kb on - strand, within HP15_3613at 3810.351 kb on - strand, within HP15_3613at 3810.351 kb on - strand, within HP15_3613at 3810.351 kb on - strand, within HP15_3613at 3810.488 kb on + strandat 3810.514 kb on - strandat 3810.641 kb on - strandat 3810.722 kb on - strandat 3810.722 kb on - strandat 3810.781 kb on + strand, within HP15_3614at 3810.799 kb on - strand, within HP15_3614at 3810.866 kb on - strand, within HP15_3614at 3810.978 kb on + strand, within HP15_3614at 3811.003 kb on + strand, within HP15_3614at 3811.072 kb on + strand, within HP15_3614at 3811.073 kb on + strand, within HP15_3614at 3811.121 kb on + strand, within HP15_3614at 3811.121 kb on + strand, within HP15_3614at 3811.126 kb on + strand, within HP15_3614at 3811.129 kb on - strand, within HP15_3614at 3811.129 kb on - strand, within HP15_3614at 3811.131 kb on + strand, within HP15_3614at 3811.134 kb on - strand, within HP15_3614at 3811.147 kb on - strand, within HP15_3614at 3811.246 kb on + strand, within HP15_3614at 3811.277 kb on + strand, within HP15_3614at 3811.285 kb on - strand, within HP15_3614at 3811.324 kb on - strand, within HP15_3614at 3811.329 kb on - strand, within HP15_3614at 3811.398 kb on + strand, within HP15_3614at 3811.434 kb on + strand, within HP15_3614at 3811.442 kb on - strand, within HP15_3614at 3811.444 kb on + strand, within HP15_3614

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
remove
3,809,001 + HP15_3612 0.46 -0.2
3,809,003 + HP15_3612 0.46 +0.3
3,809,009 - HP15_3612 0.46 +0.0
3,809,158 - HP15_3612 0.56 +0.8
3,809,178 - HP15_3612 0.57 +0.5
3,809,297 - HP15_3612 0.65 -0.1
3,809,312 - HP15_3612 0.66 -0.0
3,809,332 + HP15_3612 0.67 -0.3
3,809,339 - HP15_3612 0.68 -0.2
3,809,382 + HP15_3612 0.71 +0.6
3,809,416 + HP15_3612 0.73 +0.8
3,809,416 + HP15_3612 0.73 +0.4
3,809,436 + HP15_3612 0.74 +0.7
3,809,455 + HP15_3612 0.76 +1.0
3,809,460 + HP15_3612 0.76 +0.4
3,809,460 + HP15_3612 0.76 +0.4
3,809,468 - HP15_3612 0.76 -0.1
3,809,468 - HP15_3612 0.76 -0.5
3,809,475 - HP15_3612 0.77 +0.2
3,809,492 + HP15_3612 0.78 -0.2
3,809,500 - HP15_3612 0.78 +0.6
3,809,500 - HP15_3612 0.78 -0.1
3,809,552 + HP15_3612 0.82 -0.4
3,809,611 - HP15_3612 0.86 -0.1
3,809,687 + +0.5
3,809,695 - +0.5
3,809,716 + +0.7
3,809,824 + -0.3
3,809,832 - +0.7
3,810,059 - HP15_3613 0.14 +0.1
3,810,061 + HP15_3613 0.14 -0.2
3,810,122 + HP15_3613 0.25 +0.2
3,810,137 + HP15_3613 0.28 -0.2
3,810,165 - HP15_3613 0.33 +0.2
3,810,264 - HP15_3613 0.51 -0.9
3,810,285 - HP15_3613 0.55 -0.4
3,810,338 + HP15_3613 0.64 -0.2
3,810,343 + HP15_3613 0.65 +0.2
3,810,346 - HP15_3613 0.66 -0.4
3,810,346 - HP15_3613 0.66 +0.0
3,810,351 - HP15_3613 0.67 -0.8
3,810,351 - HP15_3613 0.67 -0.4
3,810,351 - HP15_3613 0.67 -0.2
3,810,488 + +1.0
3,810,514 - -0.2
3,810,641 - -0.3
3,810,722 - +0.1
3,810,722 - -0.3
3,810,781 + HP15_3614 0.10 +0.4
3,810,799 - HP15_3614 0.12 +0.7
3,810,866 - HP15_3614 0.18 +1.1
3,810,978 + HP15_3614 0.29 -0.1
3,811,003 + HP15_3614 0.32 +0.8
3,811,072 + HP15_3614 0.38 +0.2
3,811,073 + HP15_3614 0.38 -0.1
3,811,121 + HP15_3614 0.43 +0.8
3,811,121 + HP15_3614 0.43 +0.1
3,811,126 + HP15_3614 0.43 -3.5
3,811,129 - HP15_3614 0.44 -0.3
3,811,129 - HP15_3614 0.44 +0.3
3,811,131 + HP15_3614 0.44 -0.9
3,811,134 - HP15_3614 0.44 -0.0
3,811,147 - HP15_3614 0.46 -0.2
3,811,246 + HP15_3614 0.55 +0.2
3,811,277 + HP15_3614 0.58 -0.0
3,811,285 - HP15_3614 0.59 +1.4
3,811,324 - HP15_3614 0.63 -0.2
3,811,329 - HP15_3614 0.63 -0.1
3,811,398 + HP15_3614 0.70 +0.1
3,811,434 + HP15_3614 0.73 +0.4
3,811,442 - HP15_3614 0.74 -0.3
3,811,444 + HP15_3614 0.74 +0.2

Or see this region's nucleotide sequence