Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3612 and HP15_3613 are separated by 155 nucleotides HP15_3613 and HP15_3614 are separated by 143 nucleotides
HP15_3612: HP15_3612 - monooxygenase, flavin-binding family protein, at 3,808,302 to 3,809,828
_3612
HP15_3613: HP15_3613 - conserved hypothetical protein, membrane, at 3,809,984 to 3,810,532
_3613
HP15_3614: HP15_3614 - histone deacetylase superfamily, at 3,810,676 to 3,811,710
_3614
Position (kb)
3809
3810
3811 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3809.001 kb on + strand, within HP15_3612 at 3809.003 kb on + strand, within HP15_3612 at 3809.009 kb on - strand, within HP15_3612 at 3809.158 kb on - strand, within HP15_3612 at 3809.178 kb on - strand, within HP15_3612 at 3809.297 kb on - strand, within HP15_3612 at 3809.312 kb on - strand, within HP15_3612 at 3809.332 kb on + strand, within HP15_3612 at 3809.339 kb on - strand, within HP15_3612 at 3809.382 kb on + strand, within HP15_3612 at 3809.416 kb on + strand, within HP15_3612 at 3809.416 kb on + strand, within HP15_3612 at 3809.436 kb on + strand, within HP15_3612 at 3809.455 kb on + strand, within HP15_3612 at 3809.460 kb on + strand, within HP15_3612 at 3809.460 kb on + strand, within HP15_3612 at 3809.468 kb on - strand, within HP15_3612 at 3809.468 kb on - strand, within HP15_3612 at 3809.475 kb on - strand, within HP15_3612 at 3809.492 kb on + strand, within HP15_3612 at 3809.500 kb on - strand, within HP15_3612 at 3809.500 kb on - strand, within HP15_3612 at 3809.552 kb on + strand, within HP15_3612 at 3809.611 kb on - strand, within HP15_3612 at 3809.687 kb on + strand at 3809.695 kb on - strand at 3809.716 kb on + strand at 3809.824 kb on + strand at 3809.832 kb on - strand at 3810.059 kb on - strand, within HP15_3613 at 3810.061 kb on + strand, within HP15_3613 at 3810.122 kb on + strand, within HP15_3613 at 3810.137 kb on + strand, within HP15_3613 at 3810.165 kb on - strand, within HP15_3613 at 3810.264 kb on - strand, within HP15_3613 at 3810.285 kb on - strand, within HP15_3613 at 3810.338 kb on + strand, within HP15_3613 at 3810.343 kb on + strand, within HP15_3613 at 3810.346 kb on - strand, within HP15_3613 at 3810.346 kb on - strand, within HP15_3613 at 3810.351 kb on - strand, within HP15_3613 at 3810.351 kb on - strand, within HP15_3613 at 3810.351 kb on - strand, within HP15_3613 at 3810.488 kb on + strand at 3810.514 kb on - strand at 3810.641 kb on - strand at 3810.722 kb on - strand at 3810.722 kb on - strand at 3810.781 kb on + strand, within HP15_3614 at 3810.799 kb on - strand, within HP15_3614 at 3810.866 kb on - strand, within HP15_3614 at 3810.978 kb on + strand, within HP15_3614 at 3811.003 kb on + strand, within HP15_3614 at 3811.072 kb on + strand, within HP15_3614 at 3811.073 kb on + strand, within HP15_3614 at 3811.121 kb on + strand, within HP15_3614 at 3811.121 kb on + strand, within HP15_3614 at 3811.126 kb on + strand, within HP15_3614 at 3811.129 kb on - strand, within HP15_3614 at 3811.129 kb on - strand, within HP15_3614 at 3811.131 kb on + strand, within HP15_3614 at 3811.134 kb on - strand, within HP15_3614 at 3811.147 kb on - strand, within HP15_3614 at 3811.246 kb on + strand, within HP15_3614 at 3811.277 kb on + strand, within HP15_3614 at 3811.285 kb on - strand, within HP15_3614 at 3811.324 kb on - strand, within HP15_3614 at 3811.329 kb on - strand, within HP15_3614 at 3811.398 kb on + strand, within HP15_3614 at 3811.434 kb on + strand, within HP15_3614 at 3811.442 kb on - strand, within HP15_3614 at 3811.444 kb on + strand, within HP15_3614
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 3,809,001 + HP15_3612 0.46 -0.2 3,809,003 + HP15_3612 0.46 +0.3 3,809,009 - HP15_3612 0.46 +0.0 3,809,158 - HP15_3612 0.56 +0.8 3,809,178 - HP15_3612 0.57 +0.5 3,809,297 - HP15_3612 0.65 -0.1 3,809,312 - HP15_3612 0.66 -0.0 3,809,332 + HP15_3612 0.67 -0.3 3,809,339 - HP15_3612 0.68 -0.2 3,809,382 + HP15_3612 0.71 +0.6 3,809,416 + HP15_3612 0.73 +0.8 3,809,416 + HP15_3612 0.73 +0.4 3,809,436 + HP15_3612 0.74 +0.7 3,809,455 + HP15_3612 0.76 +1.0 3,809,460 + HP15_3612 0.76 +0.4 3,809,460 + HP15_3612 0.76 +0.4 3,809,468 - HP15_3612 0.76 -0.1 3,809,468 - HP15_3612 0.76 -0.5 3,809,475 - HP15_3612 0.77 +0.2 3,809,492 + HP15_3612 0.78 -0.2 3,809,500 - HP15_3612 0.78 +0.6 3,809,500 - HP15_3612 0.78 -0.1 3,809,552 + HP15_3612 0.82 -0.4 3,809,611 - HP15_3612 0.86 -0.1 3,809,687 + +0.5 3,809,695 - +0.5 3,809,716 + +0.7 3,809,824 + -0.3 3,809,832 - +0.7 3,810,059 - HP15_3613 0.14 +0.1 3,810,061 + HP15_3613 0.14 -0.2 3,810,122 + HP15_3613 0.25 +0.2 3,810,137 + HP15_3613 0.28 -0.2 3,810,165 - HP15_3613 0.33 +0.2 3,810,264 - HP15_3613 0.51 -0.9 3,810,285 - HP15_3613 0.55 -0.4 3,810,338 + HP15_3613 0.64 -0.2 3,810,343 + HP15_3613 0.65 +0.2 3,810,346 - HP15_3613 0.66 -0.4 3,810,346 - HP15_3613 0.66 +0.0 3,810,351 - HP15_3613 0.67 -0.8 3,810,351 - HP15_3613 0.67 -0.4 3,810,351 - HP15_3613 0.67 -0.2 3,810,488 + +1.0 3,810,514 - -0.2 3,810,641 - -0.3 3,810,722 - +0.1 3,810,722 - -0.3 3,810,781 + HP15_3614 0.10 +0.4 3,810,799 - HP15_3614 0.12 +0.7 3,810,866 - HP15_3614 0.18 +1.1 3,810,978 + HP15_3614 0.29 -0.1 3,811,003 + HP15_3614 0.32 +0.8 3,811,072 + HP15_3614 0.38 +0.2 3,811,073 + HP15_3614 0.38 -0.1 3,811,121 + HP15_3614 0.43 +0.8 3,811,121 + HP15_3614 0.43 +0.1 3,811,126 + HP15_3614 0.43 -3.5 3,811,129 - HP15_3614 0.44 -0.3 3,811,129 - HP15_3614 0.44 +0.3 3,811,131 + HP15_3614 0.44 -0.9 3,811,134 - HP15_3614 0.44 -0.0 3,811,147 - HP15_3614 0.46 -0.2 3,811,246 + HP15_3614 0.55 +0.2 3,811,277 + HP15_3614 0.58 -0.0 3,811,285 - HP15_3614 0.59 +1.4 3,811,324 - HP15_3614 0.63 -0.2 3,811,329 - HP15_3614 0.63 -0.1 3,811,398 + HP15_3614 0.70 +0.1 3,811,434 + HP15_3614 0.73 +0.4 3,811,442 - HP15_3614 0.74 -0.3 3,811,444 + HP15_3614 0.74 +0.2
Or see this region's nucleotide sequence