Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3588 and HP15_3589 are separated by 36 nucleotides HP15_3589 and HP15_3590 are separated by 115 nucleotides HP15_3590 and HP15_3591 are separated by 10 nucleotides
HP15_3588: HP15_3588 - ChaC family protein, at 3,779,605 to 3,780,171
_3588
HP15_3589: HP15_3589 - multiple antibiotic resistance (MarC)-related protein, at 3,780,208 to 3,780,831
_3589
HP15_3590: HP15_3590 - transglutaminase, N-terminal domain protein, at 3,780,947 to 3,781,900
_3590
HP15_3591: HP15_3591 - protein containing DUF404, bacteria N-terminal / DUF403, bacteria / DUF407, at 3,781,911 to 3,784,415
_3591
Position (kb)
3780
3781
3782 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3779.947 kb on - strand, within HP15_3588 at 3779.979 kb on + strand, within HP15_3588 at 3779.987 kb on - strand, within HP15_3588 at 3780.054 kb on + strand, within HP15_3588 at 3780.085 kb on - strand, within HP15_3588 at 3780.169 kb on + strand at 3780.213 kb on - strand at 3780.298 kb on + strand, within HP15_3589 at 3780.492 kb on + strand, within HP15_3589 at 3780.525 kb on - strand, within HP15_3589 at 3780.728 kb on + strand, within HP15_3589 at 3780.728 kb on + strand, within HP15_3589 at 3780.728 kb on + strand, within HP15_3589 at 3780.736 kb on - strand, within HP15_3589 at 3780.736 kb on - strand, within HP15_3589 at 3780.773 kb on + strand at 3780.883 kb on + strand at 3780.891 kb on - strand at 3780.924 kb on - strand at 3781.057 kb on + strand, within HP15_3590 at 3781.063 kb on - strand, within HP15_3590 at 3781.116 kb on - strand, within HP15_3590 at 3781.137 kb on + strand, within HP15_3590 at 3781.161 kb on - strand, within HP15_3590 at 3781.201 kb on - strand, within HP15_3590 at 3781.244 kb on + strand, within HP15_3590 at 3781.252 kb on - strand, within HP15_3590 at 3781.279 kb on + strand, within HP15_3590 at 3781.371 kb on - strand, within HP15_3590 at 3781.527 kb on + strand, within HP15_3590 at 3781.532 kb on + strand, within HP15_3590 at 3781.535 kb on - strand, within HP15_3590 at 3781.736 kb on - strand, within HP15_3590 at 3781.741 kb on + strand, within HP15_3590 at 3781.939 kb on - strand at 3782.034 kb on + strand at 3782.042 kb on - strand at 3782.042 kb on - strand at 3782.077 kb on - strand at 3782.108 kb on - strand at 3782.152 kb on + strand at 3782.179 kb on - strand, within HP15_3591 at 3782.226 kb on + strand, within HP15_3591 at 3782.250 kb on + strand, within HP15_3591 at 3782.270 kb on + strand, within HP15_3591 at 3782.331 kb on + strand, within HP15_3591 at 3782.339 kb on - strand, within HP15_3591 at 3782.339 kb on - strand, within HP15_3591 at 3782.407 kb on - strand, within HP15_3591 at 3782.455 kb on - strand, within HP15_3591 at 3782.514 kb on + strand, within HP15_3591 at 3782.522 kb on - strand, within HP15_3591 at 3782.576 kb on - strand, within HP15_3591 at 3782.592 kb on - strand, within HP15_3591 at 3782.669 kb on - strand, within HP15_3591 at 3782.781 kb on + strand, within HP15_3591 at 3782.869 kb on + strand, within HP15_3591 at 3782.894 kb on + strand, within HP15_3591
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 3,779,947 - HP15_3588 0.60 -0.3 3,779,979 + HP15_3588 0.66 +0.1 3,779,987 - HP15_3588 0.67 +0.2 3,780,054 + HP15_3588 0.79 +0.2 3,780,085 - HP15_3588 0.85 -0.2 3,780,169 + +0.3 3,780,213 - +0.9 3,780,298 + HP15_3589 0.14 -1.2 3,780,492 + HP15_3589 0.46 +0.1 3,780,525 - HP15_3589 0.51 +0.1 3,780,728 + HP15_3589 0.83 -1.4 3,780,728 + HP15_3589 0.83 +0.1 3,780,728 + HP15_3589 0.83 -0.3 3,780,736 - HP15_3589 0.85 +0.1 3,780,736 - HP15_3589 0.85 -0.5 3,780,773 + +0.4 3,780,883 + -0.1 3,780,891 - +0.3 3,780,924 - -0.2 3,781,057 + HP15_3590 0.12 -0.4 3,781,063 - HP15_3590 0.12 -0.1 3,781,116 - HP15_3590 0.18 -1.8 3,781,137 + HP15_3590 0.20 -1.0 3,781,161 - HP15_3590 0.22 +1.2 3,781,201 - HP15_3590 0.27 -1.0 3,781,244 + HP15_3590 0.31 -0.6 3,781,252 - HP15_3590 0.32 -0.0 3,781,279 + HP15_3590 0.35 -0.2 3,781,371 - HP15_3590 0.44 -0.2 3,781,527 + HP15_3590 0.61 -0.4 3,781,532 + HP15_3590 0.61 -1.3 3,781,535 - HP15_3590 0.62 -0.2 3,781,736 - HP15_3590 0.83 -1.0 3,781,741 + HP15_3590 0.83 +0.2 3,781,939 - -1.2 3,782,034 + -0.8 3,782,042 - -0.7 3,782,042 - -0.5 3,782,077 - -0.1 3,782,108 - -0.5 3,782,152 + -2.8 3,782,179 - HP15_3591 0.11 -0.1 3,782,226 + HP15_3591 0.13 -1.4 3,782,250 + HP15_3591 0.14 -0.7 3,782,270 + HP15_3591 0.14 -0.9 3,782,331 + HP15_3591 0.17 -0.5 3,782,339 - HP15_3591 0.17 -0.7 3,782,339 - HP15_3591 0.17 -0.7 3,782,407 - HP15_3591 0.20 -0.7 3,782,455 - HP15_3591 0.22 -1.1 3,782,514 + HP15_3591 0.24 -1.5 3,782,522 - HP15_3591 0.24 -0.2 3,782,576 - HP15_3591 0.27 -0.6 3,782,592 - HP15_3591 0.27 -0.5 3,782,669 - HP15_3591 0.30 -1.6 3,782,781 + HP15_3591 0.35 -0.6 3,782,869 + HP15_3591 0.38 -0.9 3,782,894 + HP15_3591 0.39 +0.3
Or see this region's nucleotide sequence