Strain Fitness in Marinobacter adhaerens HP15 around HP15_3590

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3588 and HP15_3589 are separated by 36 nucleotidesHP15_3589 and HP15_3590 are separated by 115 nucleotidesHP15_3590 and HP15_3591 are separated by 10 nucleotides HP15_3588: HP15_3588 - ChaC family protein, at 3,779,605 to 3,780,171 _3588 HP15_3589: HP15_3589 - multiple antibiotic resistance (MarC)-related protein, at 3,780,208 to 3,780,831 _3589 HP15_3590: HP15_3590 - transglutaminase, N-terminal domain protein, at 3,780,947 to 3,781,900 _3590 HP15_3591: HP15_3591 - protein containing DUF404, bacteria N-terminal / DUF403, bacteria / DUF407, at 3,781,911 to 3,784,415 _3591 Position (kb) 3780 3781 3782Strain fitness (log2 ratio) -3 -2 -1 0 1at 3779.947 kb on - strand, within HP15_3588at 3779.979 kb on + strand, within HP15_3588at 3779.987 kb on - strand, within HP15_3588at 3780.054 kb on + strand, within HP15_3588at 3780.085 kb on - strand, within HP15_3588at 3780.169 kb on + strandat 3780.213 kb on - strandat 3780.298 kb on + strand, within HP15_3589at 3780.492 kb on + strand, within HP15_3589at 3780.525 kb on - strand, within HP15_3589at 3780.728 kb on + strand, within HP15_3589at 3780.728 kb on + strand, within HP15_3589at 3780.728 kb on + strand, within HP15_3589at 3780.736 kb on - strand, within HP15_3589at 3780.736 kb on - strand, within HP15_3589at 3780.773 kb on + strandat 3780.883 kb on + strandat 3780.891 kb on - strandat 3780.924 kb on - strandat 3781.057 kb on + strand, within HP15_3590at 3781.063 kb on - strand, within HP15_3590at 3781.116 kb on - strand, within HP15_3590at 3781.137 kb on + strand, within HP15_3590at 3781.161 kb on - strand, within HP15_3590at 3781.201 kb on - strand, within HP15_3590at 3781.244 kb on + strand, within HP15_3590at 3781.252 kb on - strand, within HP15_3590at 3781.279 kb on + strand, within HP15_3590at 3781.371 kb on - strand, within HP15_3590at 3781.527 kb on + strand, within HP15_3590at 3781.532 kb on + strand, within HP15_3590at 3781.535 kb on - strand, within HP15_3590at 3781.736 kb on - strand, within HP15_3590at 3781.741 kb on + strand, within HP15_3590at 3781.939 kb on - strandat 3782.034 kb on + strandat 3782.042 kb on - strandat 3782.042 kb on - strandat 3782.077 kb on - strandat 3782.108 kb on - strandat 3782.152 kb on + strandat 3782.179 kb on - strand, within HP15_3591at 3782.226 kb on + strand, within HP15_3591at 3782.250 kb on + strand, within HP15_3591at 3782.270 kb on + strand, within HP15_3591at 3782.331 kb on + strand, within HP15_3591at 3782.339 kb on - strand, within HP15_3591at 3782.339 kb on - strand, within HP15_3591at 3782.407 kb on - strand, within HP15_3591at 3782.455 kb on - strand, within HP15_3591at 3782.514 kb on + strand, within HP15_3591at 3782.522 kb on - strand, within HP15_3591at 3782.576 kb on - strand, within HP15_3591at 3782.592 kb on - strand, within HP15_3591at 3782.669 kb on - strand, within HP15_3591at 3782.781 kb on + strand, within HP15_3591at 3782.869 kb on + strand, within HP15_3591at 3782.894 kb on + strand, within HP15_3591

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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3,779,947 - HP15_3588 0.60 -0.3
3,779,979 + HP15_3588 0.66 +0.1
3,779,987 - HP15_3588 0.67 +0.2
3,780,054 + HP15_3588 0.79 +0.2
3,780,085 - HP15_3588 0.85 -0.2
3,780,169 + +0.3
3,780,213 - +0.9
3,780,298 + HP15_3589 0.14 -1.2
3,780,492 + HP15_3589 0.46 +0.1
3,780,525 - HP15_3589 0.51 +0.1
3,780,728 + HP15_3589 0.83 -1.4
3,780,728 + HP15_3589 0.83 +0.1
3,780,728 + HP15_3589 0.83 -0.3
3,780,736 - HP15_3589 0.85 +0.1
3,780,736 - HP15_3589 0.85 -0.5
3,780,773 + +0.4
3,780,883 + -0.1
3,780,891 - +0.3
3,780,924 - -0.2
3,781,057 + HP15_3590 0.12 -0.4
3,781,063 - HP15_3590 0.12 -0.1
3,781,116 - HP15_3590 0.18 -1.8
3,781,137 + HP15_3590 0.20 -1.0
3,781,161 - HP15_3590 0.22 +1.2
3,781,201 - HP15_3590 0.27 -1.0
3,781,244 + HP15_3590 0.31 -0.6
3,781,252 - HP15_3590 0.32 -0.0
3,781,279 + HP15_3590 0.35 -0.2
3,781,371 - HP15_3590 0.44 -0.2
3,781,527 + HP15_3590 0.61 -0.4
3,781,532 + HP15_3590 0.61 -1.3
3,781,535 - HP15_3590 0.62 -0.2
3,781,736 - HP15_3590 0.83 -1.0
3,781,741 + HP15_3590 0.83 +0.2
3,781,939 - -1.2
3,782,034 + -0.8
3,782,042 - -0.7
3,782,042 - -0.5
3,782,077 - -0.1
3,782,108 - -0.5
3,782,152 + -2.8
3,782,179 - HP15_3591 0.11 -0.1
3,782,226 + HP15_3591 0.13 -1.4
3,782,250 + HP15_3591 0.14 -0.7
3,782,270 + HP15_3591 0.14 -0.9
3,782,331 + HP15_3591 0.17 -0.5
3,782,339 - HP15_3591 0.17 -0.7
3,782,339 - HP15_3591 0.17 -0.7
3,782,407 - HP15_3591 0.20 -0.7
3,782,455 - HP15_3591 0.22 -1.1
3,782,514 + HP15_3591 0.24 -1.5
3,782,522 - HP15_3591 0.24 -0.2
3,782,576 - HP15_3591 0.27 -0.6
3,782,592 - HP15_3591 0.27 -0.5
3,782,669 - HP15_3591 0.30 -1.6
3,782,781 + HP15_3591 0.35 -0.6
3,782,869 + HP15_3591 0.38 -0.9
3,782,894 + HP15_3591 0.39 +0.3

Or see this region's nucleotide sequence