Strain Fitness in Marinobacter adhaerens HP15 around HP15_3558

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3556 and HP15_3557 overlap by 4 nucleotidesHP15_3557 and HP15_3558 overlap by 1 nucleotidesHP15_3558 and HP15_3559 are separated by 1 nucleotides HP15_3556: HP15_3556 - conserved hypothetical protein, secreted, at 3,746,393 to 3,747,637 _3556 HP15_3557: HP15_3557 - conserved hypothetical protein, secreted, at 3,747,634 to 3,748,095 _3557 HP15_3558: HP15_3558 - conserved hypothetical protein, secreted, at 3,748,095 to 3,748,913 _3558 HP15_3559: HP15_3559 - endonuclease, at 3,748,915 to 3,749,784 _3559 Position (kb) 3748 3749Strain fitness (log2 ratio) -1 0 1 2 3at 3748.448 kb on - strand, within HP15_3558at 3748.472 kb on - strand, within HP15_3558at 3748.560 kb on + strand, within HP15_3558at 3748.938 kb on + strandat 3748.995 kb on + strandat 3748.995 kb on + strandat 3749.039 kb on - strand, within HP15_3559at 3749.069 kb on + strand, within HP15_3559at 3749.237 kb on + strand, within HP15_3559at 3749.255 kb on - strand, within HP15_3559at 3749.292 kb on - strand, within HP15_3559at 3749.292 kb on - strand, within HP15_3559at 3749.294 kb on + strand, within HP15_3559at 3749.305 kb on + strand, within HP15_3559at 3749.392 kb on + strand, within HP15_3559at 3749.518 kb on + strand, within HP15_3559at 3749.518 kb on + strand, within HP15_3559at 3749.526 kb on - strand, within HP15_3559at 3749.526 kb on - strand, within HP15_3559at 3749.526 kb on - strand, within HP15_3559at 3749.530 kb on + strand, within HP15_3559at 3749.568 kb on - strand, within HP15_3559at 3749.599 kb on + strand, within HP15_3559at 3749.612 kb on - strand, within HP15_3559at 3749.643 kb on - strand, within HP15_3559at 3749.643 kb on - strand, within HP15_3559at 3749.658 kb on - strand, within HP15_3559at 3749.760 kb on + strandat 3749.760 kb on + strandat 3749.760 kb on + strandat 3749.779 kb on + strandat 3749.861 kb on + strandat 3749.861 kb on + strandat 3749.869 kb on - strandat 3749.882 kb on + strandat 3749.882 kb on + strandat 3749.882 kb on + strandat 3749.882 kb on + strandat 3749.882 kb on + strandat 3749.890 kb on - strandat 3749.890 kb on - strandat 3749.890 kb on - strandat 3749.890 kb on - strandat 3749.890 kb on - strandat 3749.890 kb on - strandat 3749.890 kb on - strandat 3749.895 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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3,748,448 - HP15_3558 0.43 -0.3
3,748,472 - HP15_3558 0.46 -0.4
3,748,560 + HP15_3558 0.57 -0.3
3,748,938 + +0.2
3,748,995 + +0.4
3,748,995 + -0.2
3,749,039 - HP15_3559 0.14 -0.3
3,749,069 + HP15_3559 0.18 +1.2
3,749,237 + HP15_3559 0.37 +0.2
3,749,255 - HP15_3559 0.39 +0.3
3,749,292 - HP15_3559 0.43 +0.2
3,749,292 - HP15_3559 0.43 +1.4
3,749,294 + HP15_3559 0.44 +0.5
3,749,305 + HP15_3559 0.45 +0.7
3,749,392 + HP15_3559 0.55 -0.3
3,749,518 + HP15_3559 0.69 +0.1
3,749,518 + HP15_3559 0.69 +0.3
3,749,526 - HP15_3559 0.70 +0.1
3,749,526 - HP15_3559 0.70 +0.5
3,749,526 - HP15_3559 0.70 +0.8
3,749,530 + HP15_3559 0.71 +1.1
3,749,568 - HP15_3559 0.75 +1.5
3,749,599 + HP15_3559 0.79 -0.2
3,749,612 - HP15_3559 0.80 +0.8
3,749,643 - HP15_3559 0.84 -1.0
3,749,643 - HP15_3559 0.84 +2.8
3,749,658 - HP15_3559 0.85 -1.4
3,749,760 + +0.1
3,749,760 + +0.1
3,749,760 + -0.2
3,749,779 + -0.7
3,749,861 + +0.6
3,749,861 + -0.2
3,749,869 - -0.2
3,749,882 + +0.4
3,749,882 + -0.0
3,749,882 + +0.3
3,749,882 + +0.7
3,749,882 + +0.1
3,749,890 - -0.4
3,749,890 - +0.6
3,749,890 - -0.1
3,749,890 - +0.4
3,749,890 - +0.5
3,749,890 - +0.5
3,749,890 - -0.6
3,749,895 - +0.1

Or see this region's nucleotide sequence