Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3556 and HP15_3557 overlap by 4 nucleotides HP15_3557 and HP15_3558 overlap by 1 nucleotides HP15_3558 and HP15_3559 are separated by 1 nucleotides
HP15_3556: HP15_3556 - conserved hypothetical protein, secreted, at 3,746,393 to 3,747,637
_3556
HP15_3557: HP15_3557 - conserved hypothetical protein, secreted, at 3,747,634 to 3,748,095
_3557
HP15_3558: HP15_3558 - conserved hypothetical protein, secreted, at 3,748,095 to 3,748,913
_3558
HP15_3559: HP15_3559 - endonuclease, at 3,748,915 to 3,749,784
_3559
Position (kb)
3748
3749 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3748.448 kb on - strand, within HP15_3558 at 3748.472 kb on - strand, within HP15_3558 at 3748.560 kb on + strand, within HP15_3558 at 3748.938 kb on + strand at 3748.995 kb on + strand at 3748.995 kb on + strand at 3749.039 kb on - strand, within HP15_3559 at 3749.069 kb on + strand, within HP15_3559 at 3749.237 kb on + strand, within HP15_3559 at 3749.255 kb on - strand, within HP15_3559 at 3749.292 kb on - strand, within HP15_3559 at 3749.292 kb on - strand, within HP15_3559 at 3749.294 kb on + strand, within HP15_3559 at 3749.305 kb on + strand, within HP15_3559 at 3749.392 kb on + strand, within HP15_3559 at 3749.518 kb on + strand, within HP15_3559 at 3749.518 kb on + strand, within HP15_3559 at 3749.526 kb on - strand, within HP15_3559 at 3749.526 kb on - strand, within HP15_3559 at 3749.526 kb on - strand, within HP15_3559 at 3749.530 kb on + strand, within HP15_3559 at 3749.568 kb on - strand, within HP15_3559 at 3749.599 kb on + strand, within HP15_3559 at 3749.612 kb on - strand, within HP15_3559 at 3749.643 kb on - strand, within HP15_3559 at 3749.643 kb on - strand, within HP15_3559 at 3749.658 kb on - strand, within HP15_3559 at 3749.760 kb on + strand at 3749.760 kb on + strand at 3749.760 kb on + strand at 3749.779 kb on + strand at 3749.861 kb on + strand at 3749.861 kb on + strand at 3749.869 kb on - strand at 3749.882 kb on + strand at 3749.882 kb on + strand at 3749.882 kb on + strand at 3749.882 kb on + strand at 3749.882 kb on + strand at 3749.890 kb on - strand at 3749.890 kb on - strand at 3749.890 kb on - strand at 3749.890 kb on - strand at 3749.890 kb on - strand at 3749.890 kb on - strand at 3749.890 kb on - strand at 3749.895 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 3,748,448 - HP15_3558 0.43 -0.3 3,748,472 - HP15_3558 0.46 -0.4 3,748,560 + HP15_3558 0.57 -0.3 3,748,938 + +0.2 3,748,995 + +0.4 3,748,995 + -0.2 3,749,039 - HP15_3559 0.14 -0.3 3,749,069 + HP15_3559 0.18 +1.2 3,749,237 + HP15_3559 0.37 +0.2 3,749,255 - HP15_3559 0.39 +0.3 3,749,292 - HP15_3559 0.43 +0.2 3,749,292 - HP15_3559 0.43 +1.4 3,749,294 + HP15_3559 0.44 +0.5 3,749,305 + HP15_3559 0.45 +0.7 3,749,392 + HP15_3559 0.55 -0.3 3,749,518 + HP15_3559 0.69 +0.1 3,749,518 + HP15_3559 0.69 +0.3 3,749,526 - HP15_3559 0.70 +0.1 3,749,526 - HP15_3559 0.70 +0.5 3,749,526 - HP15_3559 0.70 +0.8 3,749,530 + HP15_3559 0.71 +1.1 3,749,568 - HP15_3559 0.75 +1.5 3,749,599 + HP15_3559 0.79 -0.2 3,749,612 - HP15_3559 0.80 +0.8 3,749,643 - HP15_3559 0.84 -1.0 3,749,643 - HP15_3559 0.84 +2.8 3,749,658 - HP15_3559 0.85 -1.4 3,749,760 + +0.1 3,749,760 + +0.1 3,749,760 + -0.2 3,749,779 + -0.7 3,749,861 + +0.6 3,749,861 + -0.2 3,749,869 - -0.2 3,749,882 + +0.4 3,749,882 + -0.0 3,749,882 + +0.3 3,749,882 + +0.7 3,749,882 + +0.1 3,749,890 - -0.4 3,749,890 - +0.6 3,749,890 - -0.1 3,749,890 - +0.4 3,749,890 - +0.5 3,749,890 - +0.5 3,749,890 - -0.6 3,749,895 - +0.1
Or see this region's nucleotide sequence