Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3554 and HP15_3555 are separated by 17 nucleotides HP15_3555 and HP15_3556 overlap by 17 nucleotides HP15_3556 and HP15_3557 overlap by 4 nucleotides HP15_3557 and HP15_3558 overlap by 1 nucleotides
HP15_3554: HP15_3554 - carboxyl-terminal protease-like protein, at 3,744,269 to 3,745,750
_3554
HP15_3555: HP15_3555 - membrane lipoprotein lipid attachment site-like protein, at 3,745,768 to 3,746,409
_3555
HP15_3556: HP15_3556 - conserved hypothetical protein, secreted, at 3,746,393 to 3,747,637
_3556
HP15_3557: HP15_3557 - conserved hypothetical protein, secreted, at 3,747,634 to 3,748,095
_3557
HP15_3558: HP15_3558 - conserved hypothetical protein, secreted, at 3,748,095 to 3,748,913
_3558
Position (kb) 3746
3747
3748 Strain fitness (log2 ratio) -1
0
1 at 3745.676 kb on - strand at 3746.591 kb on + strand, within HP15_3556 at 3746.896 kb on - strand, within HP15_3556 at 3748.448 kb on - strand, within HP15_3558 at 3748.472 kb on - strand, within HP15_3558 at 3748.560 kb on + strand, within HP15_3558
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 3,745,676 - +0.1 3,746,591 + HP15_3556 0.16 -0.4 3,746,896 - HP15_3556 0.40 -0.6 3,748,448 - HP15_3558 0.43 -0.3 3,748,472 - HP15_3558 0.46 -0.4 3,748,560 + HP15_3558 0.57 -0.3
Or see this region's nucleotide sequence