Strain Fitness in Marinobacter adhaerens HP15 around HP15_3553

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3552 and HP15_3553 are separated by 61 nucleotidesHP15_3553 and HP15_3554 are separated by 300 nucleotides HP15_3552: HP15_3552 - exoribonuclease R, at 3,741,721 to 3,743,706 _3552 HP15_3553: HP15_3553 - conserved hypothetical protein, at 3,743,768 to 3,743,968 _3553 HP15_3554: HP15_3554 - carboxyl-terminal protease-like protein, at 3,744,269 to 3,745,750 _3554 Position (kb) 3743 3744Strain fitness (log2 ratio) -1 0 1 2at 3742.943 kb on - strand, within HP15_3552at 3743.055 kb on - strand, within HP15_3552at 3743.146 kb on - strand, within HP15_3552at 3743.168 kb on - strand, within HP15_3552at 3743.232 kb on - strand, within HP15_3552at 3743.282 kb on - strand, within HP15_3552at 3743.344 kb on + strand, within HP15_3552at 3743.344 kb on + strand, within HP15_3552at 3743.383 kb on - strand, within HP15_3552at 3743.444 kb on + strand, within HP15_3552at 3743.452 kb on + strand, within HP15_3552at 3743.534 kb on + strandat 3743.542 kb on - strandat 3743.880 kb on + strand, within HP15_3553at 3743.897 kb on + strand, within HP15_3553at 3743.897 kb on + strand, within HP15_3553at 3743.897 kb on + strand, within HP15_3553at 3743.897 kb on + strand, within HP15_3553at 3743.897 kb on + strand, within HP15_3553at 3743.905 kb on - strand, within HP15_3553at 3744.132 kb on + strandat 3744.250 kb on + strandat 3744.274 kb on + strandat 3744.311 kb on - strandat 3744.348 kb on - strandat 3744.373 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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3,742,943 - HP15_3552 0.62 +0.1
3,743,055 - HP15_3552 0.67 +0.4
3,743,146 - HP15_3552 0.72 -0.4
3,743,168 - HP15_3552 0.73 +0.1
3,743,232 - HP15_3552 0.76 -0.1
3,743,282 - HP15_3552 0.79 +0.2
3,743,344 + HP15_3552 0.82 -0.4
3,743,344 + HP15_3552 0.82 +0.7
3,743,383 - HP15_3552 0.84 -0.7
3,743,444 + HP15_3552 0.87 +0.3
3,743,452 + HP15_3552 0.87 +0.2
3,743,534 + +0.1
3,743,542 - +1.4
3,743,880 + HP15_3553 0.56 -0.3
3,743,897 + HP15_3553 0.64 -0.8
3,743,897 + HP15_3553 0.64 -1.5
3,743,897 + HP15_3553 0.64 +0.0
3,743,897 + HP15_3553 0.64 -0.5
3,743,897 + HP15_3553 0.64 -0.9
3,743,905 - HP15_3553 0.68 -0.2
3,744,132 + -0.6
3,744,250 + +1.8
3,744,274 + +0.1
3,744,311 - -0.3
3,744,348 - +0.2
3,744,373 - +0.0

Or see this region's nucleotide sequence