Strain Fitness in Marinobacter adhaerens HP15 around HP15_3507

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3506 and HP15_3507 overlap by 4 nucleotidesHP15_3507 and HP15_3508 are separated by 57 nucleotidesHP15_3508 and HP15_3509 are separated by 7 nucleotidesHP15_3509 and HP15_3510 are separated by 19 nucleotides HP15_3506: HP15_3506 - dihydroorotase, multifunctional complex type, at 3,690,072 to 3,691,376 _3506 HP15_3507: HP15_3507 - aspartate carbamoyltransferase, at 3,691,373 to 3,692,356 _3507 HP15_3508: HP15_3508 - bifunctional protein PyrR, at 3,692,414 to 3,692,923 _3508 HP15_3509: HP15_3509 - Holliday junction resolvase, at 3,692,931 to 3,693,326 _3509 HP15_3510: HP15_3510 - transcriptional regulator, at 3,693,346 to 3,693,882 _3510 Position (kb) 3691 3692 3693Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3690.425 kb on - strand, within HP15_3506at 3690.470 kb on - strand, within HP15_3506at 3690.752 kb on + strand, within HP15_3506at 3690.837 kb on + strand, within HP15_3506at 3691.281 kb on - strandat 3691.291 kb on + strandat 3691.359 kb on - strandat 3691.371 kb on + strandat 3691.371 kb on + strandat 3691.371 kb on + strandat 3691.371 kb on + strandat 3691.379 kb on - strandat 3691.379 kb on - strandat 3691.838 kb on + strand, within HP15_3507at 3692.178 kb on - strand, within HP15_3507at 3692.254 kb on + strand, within HP15_3507at 3692.358 kb on - strandat 3692.449 kb on + strandat 3692.457 kb on - strandat 3692.568 kb on - strand, within HP15_3508at 3692.568 kb on - strand, within HP15_3508at 3692.635 kb on - strand, within HP15_3508at 3692.683 kb on - strand, within HP15_3508at 3692.683 kb on - strand, within HP15_3508at 3692.739 kb on + strand, within HP15_3508at 3692.778 kb on + strand, within HP15_3508at 3692.825 kb on + strand, within HP15_3508at 3692.838 kb on - strand, within HP15_3508at 3692.916 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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3,690,425 - HP15_3506 0.27 -2.5
3,690,470 - HP15_3506 0.30 -2.5
3,690,752 + HP15_3506 0.52 -1.8
3,690,837 + HP15_3506 0.59 -1.8
3,691,281 - -2.8
3,691,291 + -1.2
3,691,359 - -0.1
3,691,371 + -2.8
3,691,371 + -1.8
3,691,371 + -3.0
3,691,371 + -2.5
3,691,379 - -2.2
3,691,379 - -0.2
3,691,838 + HP15_3507 0.47 -4.1
3,692,178 - HP15_3507 0.82 -2.2
3,692,254 + HP15_3507 0.90 -2.5
3,692,358 - -2.5
3,692,449 + -0.2
3,692,457 - +0.0
3,692,568 - HP15_3508 0.30 +0.1
3,692,568 - HP15_3508 0.30 -0.3
3,692,635 - HP15_3508 0.43 -0.1
3,692,683 - HP15_3508 0.53 +0.2
3,692,683 - HP15_3508 0.53 -0.5
3,692,739 + HP15_3508 0.64 -0.2
3,692,778 + HP15_3508 0.71 -0.4
3,692,825 + HP15_3508 0.81 +0.1
3,692,838 - HP15_3508 0.83 -0.2
3,692,916 + -1.4

Or see this region's nucleotide sequence