Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3501 and HP15_3502 are separated by 26 nucleotides HP15_3502 and HP15_3503 are separated by 3 nucleotides HP15_3503 and HP15_3504 are separated by 51 nucleotides HP15_3504 and HP15_3505 are separated by 42 nucleotides
HP15_3501: HP15_3501 - integral membrane protein, possible transporter, at 3,685,058 to 3,687,121
_3501
HP15_3502: HP15_3502 - conserved hypothetical protein, at 3,687,148 to 3,688,092
_3502
HP15_3503: HP15_3503 - hypothetical protein, at 3,688,096 to 3,688,455
_3503
HP15_3504: HP15_3504 - histone-like bacterial DNA-binding protein, at 3,688,507 to 3,688,779
_3504
HP15_3505: HP15_3505 - RND type efflux pump involved in aminoglycoside resistance (AdeT), at 3,688,822 to 3,689,787
_3505
Position (kb)
3688
3689 Strain fitness (log2 ratio)
-2
-1
0
1 at 3687.108 kb on - strand at 3687.160 kb on + strand at 3687.165 kb on + strand at 3687.182 kb on + strand at 3687.383 kb on + strand, within HP15_3502 at 3687.391 kb on - strand, within HP15_3502 at 3687.396 kb on - strand, within HP15_3502 at 3687.398 kb on + strand, within HP15_3502 at 3687.445 kb on - strand, within HP15_3502 at 3687.485 kb on + strand, within HP15_3502 at 3687.491 kb on + strand, within HP15_3502 at 3687.579 kb on - strand, within HP15_3502 at 3687.580 kb on - strand, within HP15_3502 at 3687.628 kb on - strand, within HP15_3502 at 3687.731 kb on + strand, within HP15_3502 at 3687.744 kb on - strand, within HP15_3502 at 3687.771 kb on - strand, within HP15_3502 at 3687.871 kb on + strand, within HP15_3502 at 3688.011 kb on - strand at 3688.216 kb on + strand, within HP15_3503 at 3688.249 kb on + strand, within HP15_3503 at 3688.281 kb on - strand, within HP15_3503 at 3688.390 kb on - strand, within HP15_3503 at 3688.439 kb on + strand at 3688.460 kb on + strand at 3688.473 kb on - strand at 3688.516 kb on + strand at 3688.524 kb on - strand at 3688.535 kb on + strand, within HP15_3504 at 3688.636 kb on - strand, within HP15_3504 at 3688.667 kb on + strand, within HP15_3504 at 3688.720 kb on + strand, within HP15_3504 at 3688.757 kb on - strand at 3688.784 kb on + strand at 3688.792 kb on - strand at 3688.798 kb on - strand at 3688.816 kb on - strand at 3689.142 kb on + strand, within HP15_3505 at 3689.175 kb on - strand, within HP15_3505 at 3689.221 kb on + strand, within HP15_3505 at 3689.224 kb on - strand, within HP15_3505 at 3689.224 kb on - strand, within HP15_3505 at 3689.229 kb on - strand, within HP15_3505 at 3689.254 kb on + strand, within HP15_3505 at 3689.306 kb on - strand, within HP15_3505
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 3,687,108 - -0.0 3,687,160 + -0.2 3,687,165 + +0.1 3,687,182 + -1.0 3,687,383 + HP15_3502 0.25 -1.1 3,687,391 - HP15_3502 0.26 +0.2 3,687,396 - HP15_3502 0.26 -0.1 3,687,398 + HP15_3502 0.26 +0.1 3,687,445 - HP15_3502 0.31 -0.9 3,687,485 + HP15_3502 0.36 -0.2 3,687,491 + HP15_3502 0.36 +1.1 3,687,579 - HP15_3502 0.46 -0.5 3,687,580 - HP15_3502 0.46 +0.1 3,687,628 - HP15_3502 0.51 -0.3 3,687,731 + HP15_3502 0.62 +0.1 3,687,744 - HP15_3502 0.63 +0.3 3,687,771 - HP15_3502 0.66 +0.1 3,687,871 + HP15_3502 0.77 -0.6 3,688,011 - -1.2 3,688,216 + HP15_3503 0.33 -1.1 3,688,249 + HP15_3503 0.42 -0.1 3,688,281 - HP15_3503 0.51 -1.9 3,688,390 - HP15_3503 0.82 +0.1 3,688,439 + +1.0 3,688,460 + +0.2 3,688,473 - +1.3 3,688,516 + +0.9 3,688,524 - +0.5 3,688,535 + HP15_3504 0.10 +0.0 3,688,636 - HP15_3504 0.47 +0.3 3,688,667 + HP15_3504 0.59 -0.4 3,688,720 + HP15_3504 0.78 -0.5 3,688,757 - +0.5 3,688,784 + +0.6 3,688,792 - +0.1 3,688,798 - -0.0 3,688,816 - +0.2 3,689,142 + HP15_3505 0.33 +0.1 3,689,175 - HP15_3505 0.37 -0.1 3,689,221 + HP15_3505 0.41 +0.3 3,689,224 - HP15_3505 0.42 +0.0 3,689,224 - HP15_3505 0.42 -0.1 3,689,229 - HP15_3505 0.42 +0.3 3,689,254 + HP15_3505 0.45 +0.8 3,689,306 - HP15_3505 0.50 -0.0
Or see this region's nucleotide sequence