Strain Fitness in Marinobacter adhaerens HP15 around HP15_3397

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3395 and HP15_3396 overlap by 8 nucleotidesHP15_3396 and HP15_3397 are separated by 98 nucleotidesHP15_3397 and HP15_3398 are separated by 7 nucleotides HP15_3395: HP15_3395 - conserved hypothetical protein CHP00245, at 3,566,520 to 3,567,311 _3395 HP15_3396: HP15_3396 - ABC transporter, at 3,567,304 to 3,567,903 _3396 HP15_3397: HP15_3397 - conserved hypothetical protein, secreted, at 3,568,002 to 3,568,628 _3397 HP15_3398: HP15_3398 - major facilitator superfamily MFS_1, at 3,568,636 to 3,569,829 _3398 Position (kb) 3568 3569Strain fitness (log2 ratio) -2 -1 0 1 2at 3567.045 kb on + strand, within HP15_3395at 3567.053 kb on - strand, within HP15_3395at 3567.176 kb on - strand, within HP15_3395at 3567.325 kb on + strandat 3567.381 kb on - strand, within HP15_3396at 3567.384 kb on + strand, within HP15_3396at 3567.384 kb on + strand, within HP15_3396at 3567.384 kb on + strand, within HP15_3396at 3567.384 kb on + strand, within HP15_3396at 3567.392 kb on - strand, within HP15_3396at 3567.395 kb on + strand, within HP15_3396at 3567.395 kb on + strand, within HP15_3396at 3567.395 kb on + strand, within HP15_3396at 3567.395 kb on + strand, within HP15_3396at 3567.395 kb on + strand, within HP15_3396at 3567.395 kb on + strand, within HP15_3396at 3567.395 kb on + strand, within HP15_3396at 3567.403 kb on - strand, within HP15_3396at 3567.403 kb on - strand, within HP15_3396at 3567.403 kb on - strand, within HP15_3396at 3567.475 kb on - strand, within HP15_3396at 3567.560 kb on + strand, within HP15_3396at 3567.580 kb on + strand, within HP15_3396at 3567.588 kb on - strand, within HP15_3396at 3567.588 kb on - strand, within HP15_3396at 3567.601 kb on + strand, within HP15_3396at 3567.655 kb on - strand, within HP15_3396at 3567.736 kb on + strand, within HP15_3396at 3567.793 kb on - strand, within HP15_3396at 3567.818 kb on + strand, within HP15_3396at 3567.840 kb on + strand, within HP15_3396at 3567.931 kb on + strandat 3567.955 kb on - strandat 3567.962 kb on - strandat 3567.990 kb on + strandat 3567.990 kb on + strandat 3567.990 kb on + strandat 3567.990 kb on + strandat 3568.116 kb on - strand, within HP15_3397at 3568.149 kb on - strand, within HP15_3397at 3568.293 kb on - strand, within HP15_3397at 3568.393 kb on + strand, within HP15_3397at 3568.401 kb on - strand, within HP15_3397at 3568.500 kb on - strand, within HP15_3397at 3568.500 kb on - strand, within HP15_3397at 3568.518 kb on + strand, within HP15_3397at 3568.518 kb on + strand, within HP15_3397at 3568.526 kb on - strand, within HP15_3397at 3568.526 kb on - strand, within HP15_3397at 3568.526 kb on - strand, within HP15_3397at 3568.526 kb on - strand, within HP15_3397at 3568.611 kb on - strandat 3568.633 kb on + strandat 3568.738 kb on - strandat 3568.743 kb on - strandat 3568.763 kb on + strand, within HP15_3398at 3568.914 kb on + strand, within HP15_3398at 3568.918 kb on + strand, within HP15_3398at 3568.985 kb on + strand, within HP15_3398at 3568.993 kb on - strand, within HP15_3398at 3568.998 kb on - strand, within HP15_3398at 3569.042 kb on - strand, within HP15_3398at 3569.046 kb on + strand, within HP15_3398at 3569.142 kb on + strand, within HP15_3398at 3569.176 kb on + strand, within HP15_3398at 3569.184 kb on - strand, within HP15_3398at 3569.243 kb on + strand, within HP15_3398at 3569.267 kb on - strand, within HP15_3398at 3569.267 kb on - strand, within HP15_3398at 3569.270 kb on + strand, within HP15_3398at 3569.374 kb on + strand, within HP15_3398at 3569.420 kb on + strand, within HP15_3398at 3569.482 kb on + strand, within HP15_3398at 3569.526 kb on + strand, within HP15_3398at 3569.531 kb on + strand, within HP15_3398at 3569.605 kb on - strand, within HP15_3398at 3569.615 kb on - strand, within HP15_3398at 3569.617 kb on + strand, within HP15_3398at 3569.625 kb on - strand, within HP15_3398at 3569.625 kb on - strand, within HP15_3398

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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3,567,045 + HP15_3395 0.66 +0.8
3,567,053 - HP15_3395 0.67 -0.5
3,567,176 - HP15_3395 0.83 +0.8
3,567,325 + +1.0
3,567,381 - HP15_3396 0.13 +0.8
3,567,384 + HP15_3396 0.13 +0.1
3,567,384 + HP15_3396 0.13 +0.4
3,567,384 + HP15_3396 0.13 -0.1
3,567,384 + HP15_3396 0.13 +0.8
3,567,392 - HP15_3396 0.15 -0.0
3,567,395 + HP15_3396 0.15 +0.4
3,567,395 + HP15_3396 0.15 +0.2
3,567,395 + HP15_3396 0.15 -0.3
3,567,395 + HP15_3396 0.15 +1.1
3,567,395 + HP15_3396 0.15 +0.1
3,567,395 + HP15_3396 0.15 +0.3
3,567,395 + HP15_3396 0.15 -0.0
3,567,403 - HP15_3396 0.17 +0.7
3,567,403 - HP15_3396 0.17 +0.4
3,567,403 - HP15_3396 0.17 +0.3
3,567,475 - HP15_3396 0.28 +0.4
3,567,560 + HP15_3396 0.43 -0.1
3,567,580 + HP15_3396 0.46 +1.8
3,567,588 - HP15_3396 0.47 +0.3
3,567,588 - HP15_3396 0.47 -0.6
3,567,601 + HP15_3396 0.49 +0.4
3,567,655 - HP15_3396 0.58 -0.2
3,567,736 + HP15_3396 0.72 -0.1
3,567,793 - HP15_3396 0.81 +0.1
3,567,818 + HP15_3396 0.86 +0.4
3,567,840 + HP15_3396 0.89 -0.0
3,567,931 + -0.2
3,567,955 - +0.8
3,567,962 - -0.2
3,567,990 + +1.2
3,567,990 + -0.0
3,567,990 + +0.2
3,567,990 + -0.1
3,568,116 - HP15_3397 0.18 +0.1
3,568,149 - HP15_3397 0.23 -0.7
3,568,293 - HP15_3397 0.46 -0.3
3,568,393 + HP15_3397 0.62 -0.4
3,568,401 - HP15_3397 0.64 -1.8
3,568,500 - HP15_3397 0.79 -1.1
3,568,500 - HP15_3397 0.79 -0.9
3,568,518 + HP15_3397 0.82 -0.0
3,568,518 + HP15_3397 0.82 -0.3
3,568,526 - HP15_3397 0.84 +1.0
3,568,526 - HP15_3397 0.84 -0.2
3,568,526 - HP15_3397 0.84 +0.5
3,568,526 - HP15_3397 0.84 -0.7
3,568,611 - +0.6
3,568,633 + +0.2
3,568,738 - -0.2
3,568,743 - -0.0
3,568,763 + HP15_3398 0.11 -0.3
3,568,914 + HP15_3398 0.23 +0.5
3,568,918 + HP15_3398 0.24 -1.2
3,568,985 + HP15_3398 0.29 -0.1
3,568,993 - HP15_3398 0.30 +0.1
3,568,998 - HP15_3398 0.30 -0.2
3,569,042 - HP15_3398 0.34 +0.0
3,569,046 + HP15_3398 0.34 -0.4
3,569,142 + HP15_3398 0.42 +0.8
3,569,176 + HP15_3398 0.45 -0.3
3,569,184 - HP15_3398 0.46 +0.5
3,569,243 + HP15_3398 0.51 +0.4
3,569,267 - HP15_3398 0.53 +0.2
3,569,267 - HP15_3398 0.53 -0.3
3,569,270 + HP15_3398 0.53 +0.6
3,569,374 + HP15_3398 0.62 -0.1
3,569,420 + HP15_3398 0.66 +0.4
3,569,482 + HP15_3398 0.71 -1.2
3,569,526 + HP15_3398 0.75 +0.2
3,569,531 + HP15_3398 0.75 +0.7
3,569,605 - HP15_3398 0.81 +0.2
3,569,615 - HP15_3398 0.82 +0.0
3,569,617 + HP15_3398 0.82 +0.2
3,569,625 - HP15_3398 0.83 -0.6
3,569,625 - HP15_3398 0.83 -0.2

Or see this region's nucleotide sequence