Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3395 and HP15_3396 overlap by 8 nucleotides HP15_3396 and HP15_3397 are separated by 98 nucleotides HP15_3397 and HP15_3398 are separated by 7 nucleotides
HP15_3395: HP15_3395 - conserved hypothetical protein CHP00245, at 3,566,520 to 3,567,311
_3395
HP15_3396: HP15_3396 - ABC transporter, at 3,567,304 to 3,567,903
_3396
HP15_3397: HP15_3397 - conserved hypothetical protein, secreted, at 3,568,002 to 3,568,628
_3397
HP15_3398: HP15_3398 - major facilitator superfamily MFS_1, at 3,568,636 to 3,569,829
_3398
Position (kb)
3568
3569 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3567.045 kb on + strand, within HP15_3395 at 3567.053 kb on - strand, within HP15_3395 at 3567.176 kb on - strand, within HP15_3395 at 3567.325 kb on + strand at 3567.381 kb on - strand, within HP15_3396 at 3567.384 kb on + strand, within HP15_3396 at 3567.384 kb on + strand, within HP15_3396 at 3567.384 kb on + strand, within HP15_3396 at 3567.384 kb on + strand, within HP15_3396 at 3567.392 kb on - strand, within HP15_3396 at 3567.395 kb on + strand, within HP15_3396 at 3567.395 kb on + strand, within HP15_3396 at 3567.395 kb on + strand, within HP15_3396 at 3567.395 kb on + strand, within HP15_3396 at 3567.395 kb on + strand, within HP15_3396 at 3567.395 kb on + strand, within HP15_3396 at 3567.395 kb on + strand, within HP15_3396 at 3567.403 kb on - strand, within HP15_3396 at 3567.403 kb on - strand, within HP15_3396 at 3567.403 kb on - strand, within HP15_3396 at 3567.475 kb on - strand, within HP15_3396 at 3567.560 kb on + strand, within HP15_3396 at 3567.580 kb on + strand, within HP15_3396 at 3567.588 kb on - strand, within HP15_3396 at 3567.588 kb on - strand, within HP15_3396 at 3567.601 kb on + strand, within HP15_3396 at 3567.655 kb on - strand, within HP15_3396 at 3567.736 kb on + strand, within HP15_3396 at 3567.793 kb on - strand, within HP15_3396 at 3567.818 kb on + strand, within HP15_3396 at 3567.840 kb on + strand, within HP15_3396 at 3567.931 kb on + strand at 3567.955 kb on - strand at 3567.962 kb on - strand at 3567.990 kb on + strand at 3567.990 kb on + strand at 3567.990 kb on + strand at 3567.990 kb on + strand at 3568.116 kb on - strand, within HP15_3397 at 3568.149 kb on - strand, within HP15_3397 at 3568.293 kb on - strand, within HP15_3397 at 3568.393 kb on + strand, within HP15_3397 at 3568.401 kb on - strand, within HP15_3397 at 3568.500 kb on - strand, within HP15_3397 at 3568.500 kb on - strand, within HP15_3397 at 3568.518 kb on + strand, within HP15_3397 at 3568.518 kb on + strand, within HP15_3397 at 3568.526 kb on - strand, within HP15_3397 at 3568.526 kb on - strand, within HP15_3397 at 3568.526 kb on - strand, within HP15_3397 at 3568.526 kb on - strand, within HP15_3397 at 3568.611 kb on - strand at 3568.633 kb on + strand at 3568.738 kb on - strand at 3568.743 kb on - strand at 3568.763 kb on + strand, within HP15_3398 at 3568.914 kb on + strand, within HP15_3398 at 3568.918 kb on + strand, within HP15_3398 at 3568.985 kb on + strand, within HP15_3398 at 3568.993 kb on - strand, within HP15_3398 at 3568.998 kb on - strand, within HP15_3398 at 3569.042 kb on - strand, within HP15_3398 at 3569.046 kb on + strand, within HP15_3398 at 3569.142 kb on + strand, within HP15_3398 at 3569.176 kb on + strand, within HP15_3398 at 3569.184 kb on - strand, within HP15_3398 at 3569.243 kb on + strand, within HP15_3398 at 3569.267 kb on - strand, within HP15_3398 at 3569.267 kb on - strand, within HP15_3398 at 3569.270 kb on + strand, within HP15_3398 at 3569.374 kb on + strand, within HP15_3398 at 3569.420 kb on + strand, within HP15_3398 at 3569.482 kb on + strand, within HP15_3398 at 3569.526 kb on + strand, within HP15_3398 at 3569.531 kb on + strand, within HP15_3398 at 3569.605 kb on - strand, within HP15_3398 at 3569.615 kb on - strand, within HP15_3398 at 3569.617 kb on + strand, within HP15_3398 at 3569.625 kb on - strand, within HP15_3398 at 3569.625 kb on - strand, within HP15_3398
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 3,567,045 + HP15_3395 0.66 +0.8 3,567,053 - HP15_3395 0.67 -0.5 3,567,176 - HP15_3395 0.83 +0.8 3,567,325 + +1.0 3,567,381 - HP15_3396 0.13 +0.8 3,567,384 + HP15_3396 0.13 +0.1 3,567,384 + HP15_3396 0.13 +0.4 3,567,384 + HP15_3396 0.13 -0.1 3,567,384 + HP15_3396 0.13 +0.8 3,567,392 - HP15_3396 0.15 -0.0 3,567,395 + HP15_3396 0.15 +0.4 3,567,395 + HP15_3396 0.15 +0.2 3,567,395 + HP15_3396 0.15 -0.3 3,567,395 + HP15_3396 0.15 +1.1 3,567,395 + HP15_3396 0.15 +0.1 3,567,395 + HP15_3396 0.15 +0.3 3,567,395 + HP15_3396 0.15 -0.0 3,567,403 - HP15_3396 0.17 +0.7 3,567,403 - HP15_3396 0.17 +0.4 3,567,403 - HP15_3396 0.17 +0.3 3,567,475 - HP15_3396 0.28 +0.4 3,567,560 + HP15_3396 0.43 -0.1 3,567,580 + HP15_3396 0.46 +1.8 3,567,588 - HP15_3396 0.47 +0.3 3,567,588 - HP15_3396 0.47 -0.6 3,567,601 + HP15_3396 0.49 +0.4 3,567,655 - HP15_3396 0.58 -0.2 3,567,736 + HP15_3396 0.72 -0.1 3,567,793 - HP15_3396 0.81 +0.1 3,567,818 + HP15_3396 0.86 +0.4 3,567,840 + HP15_3396 0.89 -0.0 3,567,931 + -0.2 3,567,955 - +0.8 3,567,962 - -0.2 3,567,990 + +1.2 3,567,990 + -0.0 3,567,990 + +0.2 3,567,990 + -0.1 3,568,116 - HP15_3397 0.18 +0.1 3,568,149 - HP15_3397 0.23 -0.7 3,568,293 - HP15_3397 0.46 -0.3 3,568,393 + HP15_3397 0.62 -0.4 3,568,401 - HP15_3397 0.64 -1.8 3,568,500 - HP15_3397 0.79 -1.1 3,568,500 - HP15_3397 0.79 -0.9 3,568,518 + HP15_3397 0.82 -0.0 3,568,518 + HP15_3397 0.82 -0.3 3,568,526 - HP15_3397 0.84 +1.0 3,568,526 - HP15_3397 0.84 -0.2 3,568,526 - HP15_3397 0.84 +0.5 3,568,526 - HP15_3397 0.84 -0.7 3,568,611 - +0.6 3,568,633 + +0.2 3,568,738 - -0.2 3,568,743 - -0.0 3,568,763 + HP15_3398 0.11 -0.3 3,568,914 + HP15_3398 0.23 +0.5 3,568,918 + HP15_3398 0.24 -1.2 3,568,985 + HP15_3398 0.29 -0.1 3,568,993 - HP15_3398 0.30 +0.1 3,568,998 - HP15_3398 0.30 -0.2 3,569,042 - HP15_3398 0.34 +0.0 3,569,046 + HP15_3398 0.34 -0.4 3,569,142 + HP15_3398 0.42 +0.8 3,569,176 + HP15_3398 0.45 -0.3 3,569,184 - HP15_3398 0.46 +0.5 3,569,243 + HP15_3398 0.51 +0.4 3,569,267 - HP15_3398 0.53 +0.2 3,569,267 - HP15_3398 0.53 -0.3 3,569,270 + HP15_3398 0.53 +0.6 3,569,374 + HP15_3398 0.62 -0.1 3,569,420 + HP15_3398 0.66 +0.4 3,569,482 + HP15_3398 0.71 -1.2 3,569,526 + HP15_3398 0.75 +0.2 3,569,531 + HP15_3398 0.75 +0.7 3,569,605 - HP15_3398 0.81 +0.2 3,569,615 - HP15_3398 0.82 +0.0 3,569,617 + HP15_3398 0.82 +0.2 3,569,625 - HP15_3398 0.83 -0.6 3,569,625 - HP15_3398 0.83 -0.2
Or see this region's nucleotide sequence