Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3349 and HP15_3350 are separated by 58 nucleotides HP15_3350 and HP15_3351 are separated by 264 nucleotides HP15_3351 and HP15_3352 overlap by 20 nucleotides HP15_3352 and HP15_3353 are separated by 69 nucleotides
HP15_3349: HP15_3349 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 3,512,111 to 3,513,265
_3349
HP15_3350: HP15_3350 - rubredoxin-type Fe(Cys)4 protein, at 3,513,324 to 3,513,491
_3350
HP15_3351: HP15_3351 - hypoxanthine-guanine phosphoribosyltransferase, at 3,513,756 to 3,514,313
_3351
HP15_3352: HP15_3352 - chorismate-pyruvate lyase, at 3,514,294 to 3,514,857
_3352
HP15_3353: HP15_3353 - 4-hydroxybenzoate octaprenyltransferase, at 3,514,927 to 3,515,814
_3353
Position (kb)
3513
3514
3515 Strain fitness (log2 ratio)
-1
0
1 at 3512.965 kb on - strand, within HP15_3349 at 3513.062 kb on + strand, within HP15_3349 at 3513.148 kb on - strand, within HP15_3349 at 3513.172 kb on - strand at 3513.221 kb on + strand at 3513.251 kb on + strand at 3513.256 kb on + strand at 3513.278 kb on + strand at 3513.374 kb on + strand, within HP15_3350 at 3513.374 kb on + strand, within HP15_3350 at 3513.424 kb on - strand, within HP15_3350 at 3513.470 kb on + strand, within HP15_3350 at 3513.478 kb on - strand at 3513.577 kb on - strand at 3513.594 kb on + strand at 3513.603 kb on - strand at 3513.603 kb on - strand at 3513.642 kb on + strand at 3513.694 kb on + strand at 3513.702 kb on - strand at 3513.711 kb on + strand at 3513.719 kb on - strand at 3513.744 kb on + strand at 3513.785 kb on + strand at 3513.791 kb on + strand at 3514.096 kb on - strand, within HP15_3351 at 3514.098 kb on - strand, within HP15_3351 at 3514.232 kb on - strand, within HP15_3351 at 3514.257 kb on + strand, within HP15_3351 at 3514.353 kb on - strand, within HP15_3352 at 3514.382 kb on + strand, within HP15_3352 at 3514.385 kb on - strand, within HP15_3352 at 3514.400 kb on - strand, within HP15_3352 at 3514.499 kb on - strand, within HP15_3352 at 3514.590 kb on + strand, within HP15_3352 at 3514.598 kb on - strand, within HP15_3352 at 3514.618 kb on + strand, within HP15_3352 at 3514.626 kb on - strand, within HP15_3352 at 3514.626 kb on - strand, within HP15_3352 at 3514.765 kb on - strand, within HP15_3352 at 3514.794 kb on + strand, within HP15_3352 at 3514.794 kb on + strand, within HP15_3352 at 3514.797 kb on - strand, within HP15_3352 at 3514.890 kb on - strand at 3514.932 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 3,512,965 - HP15_3349 0.74 +1.1 3,513,062 + HP15_3349 0.82 -0.7 3,513,148 - HP15_3349 0.90 -0.5 3,513,172 - +1.6 3,513,221 + -0.4 3,513,251 + -0.1 3,513,256 + +0.1 3,513,278 + -0.1 3,513,374 + HP15_3350 0.30 -0.4 3,513,374 + HP15_3350 0.30 -0.1 3,513,424 - HP15_3350 0.60 -0.1 3,513,470 + HP15_3350 0.87 -0.1 3,513,478 - -0.5 3,513,577 - +0.3 3,513,594 + +0.2 3,513,603 - +0.3 3,513,603 - -0.2 3,513,642 + +0.1 3,513,694 + +0.4 3,513,702 - +0.1 3,513,711 + +0.1 3,513,719 - -0.3 3,513,744 + -0.2 3,513,785 + +0.4 3,513,791 + +1.1 3,514,096 - HP15_3351 0.61 -1.0 3,514,098 - HP15_3351 0.61 -1.0 3,514,232 - HP15_3351 0.85 -0.8 3,514,257 + HP15_3351 0.90 -1.2 3,514,353 - HP15_3352 0.10 +0.2 3,514,382 + HP15_3352 0.16 +0.6 3,514,385 - HP15_3352 0.16 -0.3 3,514,400 - HP15_3352 0.19 -0.1 3,514,499 - HP15_3352 0.36 -0.3 3,514,590 + HP15_3352 0.52 +0.1 3,514,598 - HP15_3352 0.54 +0.1 3,514,618 + HP15_3352 0.57 +0.2 3,514,626 - HP15_3352 0.59 +0.2 3,514,626 - HP15_3352 0.59 +0.2 3,514,765 - HP15_3352 0.84 -0.2 3,514,794 + HP15_3352 0.89 -0.4 3,514,794 + HP15_3352 0.89 +0.4 3,514,797 - HP15_3352 0.89 -0.3 3,514,890 - +0.0 3,514,932 + -0.2
Or see this region's nucleotide sequence