Strain Fitness in Marinobacter adhaerens HP15 around HP15_3351

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3349 and HP15_3350 are separated by 58 nucleotidesHP15_3350 and HP15_3351 are separated by 264 nucleotidesHP15_3351 and HP15_3352 overlap by 20 nucleotidesHP15_3352 and HP15_3353 are separated by 69 nucleotides HP15_3349: HP15_3349 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 3,512,111 to 3,513,265 _3349 HP15_3350: HP15_3350 - rubredoxin-type Fe(Cys)4 protein, at 3,513,324 to 3,513,491 _3350 HP15_3351: HP15_3351 - hypoxanthine-guanine phosphoribosyltransferase, at 3,513,756 to 3,514,313 _3351 HP15_3352: HP15_3352 - chorismate-pyruvate lyase, at 3,514,294 to 3,514,857 _3352 HP15_3353: HP15_3353 - 4-hydroxybenzoate octaprenyltransferase, at 3,514,927 to 3,515,814 _3353 Position (kb) 3513 3514 3515Strain fitness (log2 ratio) -1 0 1at 3512.965 kb on - strand, within HP15_3349at 3513.062 kb on + strand, within HP15_3349at 3513.148 kb on - strand, within HP15_3349at 3513.172 kb on - strandat 3513.221 kb on + strandat 3513.251 kb on + strandat 3513.256 kb on + strandat 3513.278 kb on + strandat 3513.374 kb on + strand, within HP15_3350at 3513.374 kb on + strand, within HP15_3350at 3513.424 kb on - strand, within HP15_3350at 3513.470 kb on + strand, within HP15_3350at 3513.478 kb on - strandat 3513.577 kb on - strandat 3513.594 kb on + strandat 3513.603 kb on - strandat 3513.603 kb on - strandat 3513.642 kb on + strandat 3513.694 kb on + strandat 3513.702 kb on - strandat 3513.711 kb on + strandat 3513.719 kb on - strandat 3513.744 kb on + strandat 3513.785 kb on + strandat 3513.791 kb on + strandat 3514.096 kb on - strand, within HP15_3351at 3514.098 kb on - strand, within HP15_3351at 3514.232 kb on - strand, within HP15_3351at 3514.257 kb on + strand, within HP15_3351at 3514.353 kb on - strand, within HP15_3352at 3514.382 kb on + strand, within HP15_3352at 3514.385 kb on - strand, within HP15_3352at 3514.400 kb on - strand, within HP15_3352at 3514.499 kb on - strand, within HP15_3352at 3514.590 kb on + strand, within HP15_3352at 3514.598 kb on - strand, within HP15_3352at 3514.618 kb on + strand, within HP15_3352at 3514.626 kb on - strand, within HP15_3352at 3514.626 kb on - strand, within HP15_3352at 3514.765 kb on - strand, within HP15_3352at 3514.794 kb on + strand, within HP15_3352at 3514.794 kb on + strand, within HP15_3352at 3514.797 kb on - strand, within HP15_3352at 3514.890 kb on - strandat 3514.932 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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3,512,965 - HP15_3349 0.74 +1.1
3,513,062 + HP15_3349 0.82 -0.7
3,513,148 - HP15_3349 0.90 -0.5
3,513,172 - +1.6
3,513,221 + -0.4
3,513,251 + -0.1
3,513,256 + +0.1
3,513,278 + -0.1
3,513,374 + HP15_3350 0.30 -0.4
3,513,374 + HP15_3350 0.30 -0.1
3,513,424 - HP15_3350 0.60 -0.1
3,513,470 + HP15_3350 0.87 -0.1
3,513,478 - -0.5
3,513,577 - +0.3
3,513,594 + +0.2
3,513,603 - +0.3
3,513,603 - -0.2
3,513,642 + +0.1
3,513,694 + +0.4
3,513,702 - +0.1
3,513,711 + +0.1
3,513,719 - -0.3
3,513,744 + -0.2
3,513,785 + +0.4
3,513,791 + +1.1
3,514,096 - HP15_3351 0.61 -1.0
3,514,098 - HP15_3351 0.61 -1.0
3,514,232 - HP15_3351 0.85 -0.8
3,514,257 + HP15_3351 0.90 -1.2
3,514,353 - HP15_3352 0.10 +0.2
3,514,382 + HP15_3352 0.16 +0.6
3,514,385 - HP15_3352 0.16 -0.3
3,514,400 - HP15_3352 0.19 -0.1
3,514,499 - HP15_3352 0.36 -0.3
3,514,590 + HP15_3352 0.52 +0.1
3,514,598 - HP15_3352 0.54 +0.1
3,514,618 + HP15_3352 0.57 +0.2
3,514,626 - HP15_3352 0.59 +0.2
3,514,626 - HP15_3352 0.59 +0.2
3,514,765 - HP15_3352 0.84 -0.2
3,514,794 + HP15_3352 0.89 -0.4
3,514,794 + HP15_3352 0.89 +0.4
3,514,797 - HP15_3352 0.89 -0.3
3,514,890 - +0.0
3,514,932 + -0.2

Or see this region's nucleotide sequence