Strain Fitness in Marinobacter adhaerens HP15 around HP15_3334

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3333 and HP15_3334 are separated by 21 nucleotidesHP15_3334 and HP15_3335 are separated by 49 nucleotides HP15_3333: HP15_3333 - membrane protein YdgA-like protein, at 3,493,495 to 3,494,784 _3333 HP15_3334: HP15_3334 - polyphosphate kinase, at 3,494,806 to 3,496,947 _3334 HP15_3335: HP15_3335 - delta-aminolevulinic acid dehydratase, at 3,496,997 to 3,498,016 _3335 Position (kb) 3494 3495 3496 3497Strain fitness (log2 ratio) -2 -1 0 1at 3493.873 kb on - strand, within HP15_3333at 3493.893 kb on + strand, within HP15_3333at 3493.959 kb on - strand, within HP15_3333at 3494.003 kb on + strand, within HP15_3333at 3494.003 kb on + strand, within HP15_3333at 3494.003 kb on + strand, within HP15_3333at 3494.038 kb on + strand, within HP15_3333at 3494.064 kb on - strand, within HP15_3333at 3494.082 kb on + strand, within HP15_3333at 3494.177 kb on - strand, within HP15_3333at 3494.180 kb on + strand, within HP15_3333at 3494.188 kb on - strand, within HP15_3333at 3494.228 kb on + strand, within HP15_3333at 3494.257 kb on + strand, within HP15_3333at 3494.262 kb on + strand, within HP15_3333at 3494.262 kb on + strand, within HP15_3333at 3494.262 kb on + strand, within HP15_3333at 3494.270 kb on - strand, within HP15_3333at 3494.270 kb on - strand, within HP15_3333at 3494.270 kb on - strand, within HP15_3333at 3494.542 kb on - strand, within HP15_3333at 3494.542 kb on - strand, within HP15_3333at 3494.555 kb on - strand, within HP15_3333at 3494.656 kb on + strandat 3494.674 kb on - strandat 3494.720 kb on + strandat 3494.720 kb on + strandat 3494.720 kb on + strandat 3494.728 kb on - strandat 3494.728 kb on - strandat 3494.728 kb on - strandat 3494.865 kb on - strandat 3494.894 kb on - strandat 3494.904 kb on + strandat 3494.959 kb on - strandat 3495.202 kb on + strand, within HP15_3334at 3495.232 kb on - strand, within HP15_3334at 3495.331 kb on + strand, within HP15_3334at 3495.368 kb on + strand, within HP15_3334at 3495.368 kb on + strand, within HP15_3334at 3495.460 kb on - strand, within HP15_3334at 3495.594 kb on - strand, within HP15_3334at 3495.929 kb on - strand, within HP15_3334at 3495.963 kb on - strand, within HP15_3334at 3496.016 kb on - strand, within HP15_3334at 3496.104 kb on - strand, within HP15_3334at 3496.160 kb on + strand, within HP15_3334at 3496.177 kb on - strand, within HP15_3334at 3496.285 kb on - strand, within HP15_3334at 3496.430 kb on - strand, within HP15_3334at 3496.444 kb on - strand, within HP15_3334at 3496.489 kb on - strand, within HP15_3334at 3496.536 kb on - strand, within HP15_3334at 3496.576 kb on - strand, within HP15_3334at 3496.604 kb on + strand, within HP15_3334at 3496.854 kb on + strandat 3496.973 kb on - strandat 3496.996 kb on - strandat 3497.021 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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3,493,873 - HP15_3333 0.29 -0.6
3,493,893 + HP15_3333 0.31 -1.8
3,493,959 - HP15_3333 0.36 +0.1
3,494,003 + HP15_3333 0.39 +0.2
3,494,003 + HP15_3333 0.39 -0.0
3,494,003 + HP15_3333 0.39 -0.2
3,494,038 + HP15_3333 0.42 -0.2
3,494,064 - HP15_3333 0.44 +0.4
3,494,082 + HP15_3333 0.46 +0.9
3,494,177 - HP15_3333 0.53 +0.3
3,494,180 + HP15_3333 0.53 -1.2
3,494,188 - HP15_3333 0.54 +0.6
3,494,228 + HP15_3333 0.57 -0.2
3,494,257 + HP15_3333 0.59 +0.3
3,494,262 + HP15_3333 0.59 +0.8
3,494,262 + HP15_3333 0.59 -0.2
3,494,262 + HP15_3333 0.59 -0.3
3,494,270 - HP15_3333 0.60 +1.0
3,494,270 - HP15_3333 0.60 -0.5
3,494,270 - HP15_3333 0.60 +0.7
3,494,542 - HP15_3333 0.81 -0.1
3,494,542 - HP15_3333 0.81 +0.0
3,494,555 - HP15_3333 0.82 +0.5
3,494,656 + +0.3
3,494,674 - +0.2
3,494,720 + -2.2
3,494,720 + +0.9
3,494,720 + +0.1
3,494,728 - +0.6
3,494,728 - +0.1
3,494,728 - +0.4
3,494,865 - +0.4
3,494,894 - -0.8
3,494,904 + -0.0
3,494,959 - -0.6
3,495,202 + HP15_3334 0.18 -1.4
3,495,232 - HP15_3334 0.20 -0.5
3,495,331 + HP15_3334 0.25 -1.2
3,495,368 + HP15_3334 0.26 +1.4
3,495,368 + HP15_3334 0.26 -0.2
3,495,460 - HP15_3334 0.31 -0.8
3,495,594 - HP15_3334 0.37 -0.5
3,495,929 - HP15_3334 0.52 -0.8
3,495,963 - HP15_3334 0.54 +0.5
3,496,016 - HP15_3334 0.56 -0.7
3,496,104 - HP15_3334 0.61 -1.1
3,496,160 + HP15_3334 0.63 +0.5
3,496,177 - HP15_3334 0.64 -1.2
3,496,285 - HP15_3334 0.69 -0.6
3,496,430 - HP15_3334 0.76 -0.2
3,496,444 - HP15_3334 0.76 -1.0
3,496,489 - HP15_3334 0.79 -1.1
3,496,536 - HP15_3334 0.81 -0.7
3,496,576 - HP15_3334 0.83 -1.0
3,496,604 + HP15_3334 0.84 +0.3
3,496,854 + -0.8
3,496,973 - -0.3
3,496,996 - +1.1
3,497,021 - +0.4

Or see this region's nucleotide sequence