Strain Fitness in Marinobacter adhaerens HP15 around HP15_3317

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3316 and HP15_3317 are separated by 24 nucleotidesHP15_3317 and HP15_3318 are separated by 57 nucleotides HP15_3316: HP15_3316 - acetylornithine deacetylase, at 3,476,407 to 3,477,657 _3316 HP15_3317: HP15_3317 - acetylglutamate kinase, at 3,477,682 to 3,478,578 _3317 HP15_3318: HP15_3318 - phosphomannomutase, at 3,478,636 to 3,481,278 _3318 Position (kb) 3477 3478 3479Strain fitness (log2 ratio) -2 -1 0 1 2at 3476.724 kb on + strand, within HP15_3316at 3476.845 kb on - strand, within HP15_3316at 3477.086 kb on + strand, within HP15_3316at 3477.086 kb on + strand, within HP15_3316at 3477.104 kb on - strand, within HP15_3316at 3477.112 kb on + strand, within HP15_3316at 3477.123 kb on - strand, within HP15_3316at 3477.204 kb on - strand, within HP15_3316at 3477.204 kb on - strand, within HP15_3316at 3477.236 kb on - strand, within HP15_3316at 3477.323 kb on - strand, within HP15_3316at 3477.323 kb on - strand, within HP15_3316at 3477.327 kb on + strand, within HP15_3316at 3477.327 kb on + strand, within HP15_3316at 3477.327 kb on + strand, within HP15_3316at 3477.327 kb on + strand, within HP15_3316at 3477.327 kb on + strand, within HP15_3316at 3477.327 kb on + strand, within HP15_3316at 3477.335 kb on - strand, within HP15_3316at 3477.335 kb on - strand, within HP15_3316at 3477.350 kb on + strand, within HP15_3316at 3477.399 kb on + strand, within HP15_3316at 3477.506 kb on + strand, within HP15_3316at 3477.523 kb on + strand, within HP15_3316at 3477.523 kb on + strand, within HP15_3316at 3477.531 kb on - strand, within HP15_3316at 3477.531 kb on - strand, within HP15_3316at 3477.531 kb on - strand, within HP15_3316at 3477.531 kb on - strand, within HP15_3316at 3477.531 kb on - strand, within HP15_3316at 3477.584 kb on + strandat 3477.634 kb on - strandat 3477.796 kb on + strand, within HP15_3317at 3478.281 kb on - strand, within HP15_3317at 3478.567 kb on + strandat 3478.691 kb on + strandat 3478.743 kb on + strandat 3478.756 kb on - strandat 3478.855 kb on + strandat 3479.272 kb on + strand, within HP15_3318at 3479.414 kb on + strand, within HP15_3318at 3479.448 kb on - strand, within HP15_3318at 3479.465 kb on - strand, within HP15_3318at 3479.504 kb on + strand, within HP15_3318at 3479.505 kb on + strand, within HP15_3318at 3479.512 kb on - strand, within HP15_3318

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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3,476,724 + HP15_3316 0.25 -0.9
3,476,845 - HP15_3316 0.35 -0.2
3,477,086 + HP15_3316 0.54 +0.3
3,477,086 + HP15_3316 0.54 +0.8
3,477,104 - HP15_3316 0.56 -1.8
3,477,112 + HP15_3316 0.56 +0.9
3,477,123 - HP15_3316 0.57 +0.2
3,477,204 - HP15_3316 0.64 +0.4
3,477,204 - HP15_3316 0.64 +0.4
3,477,236 - HP15_3316 0.66 +1.8
3,477,323 - HP15_3316 0.73 +0.4
3,477,323 - HP15_3316 0.73 +0.6
3,477,327 + HP15_3316 0.74 -0.2
3,477,327 + HP15_3316 0.74 -0.6
3,477,327 + HP15_3316 0.74 -0.0
3,477,327 + HP15_3316 0.74 +0.0
3,477,327 + HP15_3316 0.74 -0.7
3,477,327 + HP15_3316 0.74 +0.4
3,477,335 - HP15_3316 0.74 -0.1
3,477,335 - HP15_3316 0.74 +0.2
3,477,350 + HP15_3316 0.75 +0.9
3,477,399 + HP15_3316 0.79 -0.2
3,477,506 + HP15_3316 0.88 +0.6
3,477,523 + HP15_3316 0.89 +0.0
3,477,523 + HP15_3316 0.89 -0.2
3,477,531 - HP15_3316 0.90 +0.1
3,477,531 - HP15_3316 0.90 -0.1
3,477,531 - HP15_3316 0.90 +0.2
3,477,531 - HP15_3316 0.90 -0.4
3,477,531 - HP15_3316 0.90 +1.8
3,477,584 + -0.1
3,477,634 - +0.1
3,477,796 + HP15_3317 0.13 -1.5
3,478,281 - HP15_3317 0.67 -1.2
3,478,567 + +0.3
3,478,691 + -0.2
3,478,743 + -0.2
3,478,756 - +0.3
3,478,855 + +0.4
3,479,272 + HP15_3318 0.24 +0.1
3,479,414 + HP15_3318 0.29 -0.2
3,479,448 - HP15_3318 0.31 -0.4
3,479,465 - HP15_3318 0.31 -0.4
3,479,504 + HP15_3318 0.33 +0.4
3,479,505 + HP15_3318 0.33 +0.1
3,479,512 - HP15_3318 0.33 +0.5

Or see this region's nucleotide sequence