Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3316 and HP15_3317 are separated by 24 nucleotides HP15_3317 and HP15_3318 are separated by 57 nucleotides
HP15_3316: HP15_3316 - acetylornithine deacetylase, at 3,476,407 to 3,477,657
_3316
HP15_3317: HP15_3317 - acetylglutamate kinase, at 3,477,682 to 3,478,578
_3317
HP15_3318: HP15_3318 - phosphomannomutase, at 3,478,636 to 3,481,278
_3318
Position (kb)
3477
3478
3479 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3476.724 kb on + strand, within HP15_3316 at 3476.845 kb on - strand, within HP15_3316 at 3477.086 kb on + strand, within HP15_3316 at 3477.086 kb on + strand, within HP15_3316 at 3477.104 kb on - strand, within HP15_3316 at 3477.112 kb on + strand, within HP15_3316 at 3477.123 kb on - strand, within HP15_3316 at 3477.204 kb on - strand, within HP15_3316 at 3477.204 kb on - strand, within HP15_3316 at 3477.236 kb on - strand, within HP15_3316 at 3477.323 kb on - strand, within HP15_3316 at 3477.323 kb on - strand, within HP15_3316 at 3477.327 kb on + strand, within HP15_3316 at 3477.327 kb on + strand, within HP15_3316 at 3477.327 kb on + strand, within HP15_3316 at 3477.327 kb on + strand, within HP15_3316 at 3477.327 kb on + strand, within HP15_3316 at 3477.327 kb on + strand, within HP15_3316 at 3477.335 kb on - strand, within HP15_3316 at 3477.335 kb on - strand, within HP15_3316 at 3477.350 kb on + strand, within HP15_3316 at 3477.399 kb on + strand, within HP15_3316 at 3477.506 kb on + strand, within HP15_3316 at 3477.523 kb on + strand, within HP15_3316 at 3477.523 kb on + strand, within HP15_3316 at 3477.531 kb on - strand, within HP15_3316 at 3477.531 kb on - strand, within HP15_3316 at 3477.531 kb on - strand, within HP15_3316 at 3477.531 kb on - strand, within HP15_3316 at 3477.531 kb on - strand, within HP15_3316 at 3477.584 kb on + strand at 3477.634 kb on - strand at 3477.796 kb on + strand, within HP15_3317 at 3478.281 kb on - strand, within HP15_3317 at 3478.567 kb on + strand at 3478.691 kb on + strand at 3478.743 kb on + strand at 3478.756 kb on - strand at 3478.855 kb on + strand at 3479.272 kb on + strand, within HP15_3318 at 3479.414 kb on + strand, within HP15_3318 at 3479.448 kb on - strand, within HP15_3318 at 3479.465 kb on - strand, within HP15_3318 at 3479.504 kb on + strand, within HP15_3318 at 3479.505 kb on + strand, within HP15_3318 at 3479.512 kb on - strand, within HP15_3318
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 3,476,724 + HP15_3316 0.25 -0.9 3,476,845 - HP15_3316 0.35 -0.2 3,477,086 + HP15_3316 0.54 +0.3 3,477,086 + HP15_3316 0.54 +0.8 3,477,104 - HP15_3316 0.56 -1.8 3,477,112 + HP15_3316 0.56 +0.9 3,477,123 - HP15_3316 0.57 +0.2 3,477,204 - HP15_3316 0.64 +0.4 3,477,204 - HP15_3316 0.64 +0.4 3,477,236 - HP15_3316 0.66 +1.8 3,477,323 - HP15_3316 0.73 +0.4 3,477,323 - HP15_3316 0.73 +0.6 3,477,327 + HP15_3316 0.74 -0.2 3,477,327 + HP15_3316 0.74 -0.6 3,477,327 + HP15_3316 0.74 -0.0 3,477,327 + HP15_3316 0.74 +0.0 3,477,327 + HP15_3316 0.74 -0.7 3,477,327 + HP15_3316 0.74 +0.4 3,477,335 - HP15_3316 0.74 -0.1 3,477,335 - HP15_3316 0.74 +0.2 3,477,350 + HP15_3316 0.75 +0.9 3,477,399 + HP15_3316 0.79 -0.2 3,477,506 + HP15_3316 0.88 +0.6 3,477,523 + HP15_3316 0.89 +0.0 3,477,523 + HP15_3316 0.89 -0.2 3,477,531 - HP15_3316 0.90 +0.1 3,477,531 - HP15_3316 0.90 -0.1 3,477,531 - HP15_3316 0.90 +0.2 3,477,531 - HP15_3316 0.90 -0.4 3,477,531 - HP15_3316 0.90 +1.8 3,477,584 + -0.1 3,477,634 - +0.1 3,477,796 + HP15_3317 0.13 -1.5 3,478,281 - HP15_3317 0.67 -1.2 3,478,567 + +0.3 3,478,691 + -0.2 3,478,743 + -0.2 3,478,756 - +0.3 3,478,855 + +0.4 3,479,272 + HP15_3318 0.24 +0.1 3,479,414 + HP15_3318 0.29 -0.2 3,479,448 - HP15_3318 0.31 -0.4 3,479,465 - HP15_3318 0.31 -0.4 3,479,504 + HP15_3318 0.33 +0.4 3,479,505 + HP15_3318 0.33 +0.1 3,479,512 - HP15_3318 0.33 +0.5
Or see this region's nucleotide sequence