Strain Fitness in Marinobacter adhaerens HP15 around HP15_3314

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3313 and HP15_3314 overlap by 27 nucleotidesHP15_3314 and HP15_3315 are separated by 205 nucleotides HP15_3313: HP15_3313 - zinc protease protein, at 3,472,654 to 3,473,724 _3313 HP15_3314: HP15_3314 - N-acetyllutamate synthase, at 3,473,698 to 3,475,005 _3314 HP15_3315: HP15_3315 - acetylornithine deacetylase (ArgE), at 3,475,211 to 3,476,380 _3315 Position (kb) 3473 3474 3475 3476Strain fitness (log2 ratio) -2 -1 0 1 2at 3472.802 kb on + strand, within HP15_3313at 3472.802 kb on + strand, within HP15_3313at 3472.802 kb on + strand, within HP15_3313at 3472.928 kb on + strand, within HP15_3313at 3472.931 kb on - strand, within HP15_3313at 3472.933 kb on + strand, within HP15_3313at 3472.941 kb on + strand, within HP15_3313at 3473.089 kb on - strand, within HP15_3313at 3473.105 kb on + strand, within HP15_3313at 3473.139 kb on - strand, within HP15_3313at 3473.151 kb on - strand, within HP15_3313at 3473.208 kb on + strand, within HP15_3313at 3473.209 kb on - strand, within HP15_3313at 3473.218 kb on + strand, within HP15_3313at 3473.242 kb on + strand, within HP15_3313at 3473.295 kb on + strand, within HP15_3313at 3473.308 kb on - strand, within HP15_3313at 3473.320 kb on + strand, within HP15_3313at 3473.320 kb on + strand, within HP15_3313at 3473.482 kb on - strand, within HP15_3313at 3473.509 kb on - strand, within HP15_3313at 3473.611 kb on + strand, within HP15_3313at 3473.743 kb on - strandat 3473.751 kb on + strandat 3473.766 kb on + strandat 3473.767 kb on + strandat 3473.863 kb on - strand, within HP15_3314at 3473.876 kb on - strand, within HP15_3314at 3473.960 kb on + strand, within HP15_3314at 3473.965 kb on + strand, within HP15_3314at 3473.971 kb on - strand, within HP15_3314at 3473.973 kb on + strand, within HP15_3314at 3473.976 kb on - strand, within HP15_3314at 3474.091 kb on - strand, within HP15_3314at 3474.152 kb on + strand, within HP15_3314at 3474.160 kb on - strand, within HP15_3314at 3474.160 kb on - strand, within HP15_3314at 3474.238 kb on + strand, within HP15_3314at 3474.267 kb on - strand, within HP15_3314at 3474.456 kb on + strand, within HP15_3314at 3474.641 kb on - strand, within HP15_3314at 3474.672 kb on - strand, within HP15_3314at 3474.846 kb on + strand, within HP15_3314at 3474.854 kb on - strand, within HP15_3314at 3474.856 kb on + strand, within HP15_3314at 3475.072 kb on + strandat 3475.169 kb on + strandat 3475.258 kb on + strandat 3475.271 kb on - strandat 3475.271 kb on - strandat 3475.322 kb on + strandat 3475.416 kb on + strand, within HP15_3315at 3475.416 kb on + strand, within HP15_3315at 3475.416 kb on + strand, within HP15_3315at 3475.424 kb on - strand, within HP15_3315at 3475.451 kb on - strand, within HP15_3315at 3475.463 kb on + strand, within HP15_3315at 3475.492 kb on + strand, within HP15_3315at 3475.521 kb on - strand, within HP15_3315at 3475.583 kb on - strand, within HP15_3315at 3475.604 kb on + strand, within HP15_3315at 3475.648 kb on + strand, within HP15_3315at 3475.765 kb on - strand, within HP15_3315at 3475.878 kb on + strand, within HP15_3315at 3475.886 kb on - strand, within HP15_3315at 3475.915 kb on + strand, within HP15_3315at 3475.953 kb on + strand, within HP15_3315

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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3,472,802 + HP15_3313 0.14 -0.3
3,472,802 + HP15_3313 0.14 -0.7
3,472,802 + HP15_3313 0.14 -0.0
3,472,928 + HP15_3313 0.26 -0.4
3,472,931 - HP15_3313 0.26 -0.1
3,472,933 + HP15_3313 0.26 +1.6
3,472,941 + HP15_3313 0.27 +0.5
3,473,089 - HP15_3313 0.41 +0.5
3,473,105 + HP15_3313 0.42 +0.3
3,473,139 - HP15_3313 0.45 +0.2
3,473,151 - HP15_3313 0.46 +0.3
3,473,208 + HP15_3313 0.52 -0.3
3,473,209 - HP15_3313 0.52 -0.6
3,473,218 + HP15_3313 0.53 -1.1
3,473,242 + HP15_3313 0.55 -0.3
3,473,295 + HP15_3313 0.60 -0.0
3,473,308 - HP15_3313 0.61 +0.5
3,473,320 + HP15_3313 0.62 +0.2
3,473,320 + HP15_3313 0.62 +0.8
3,473,482 - HP15_3313 0.77 +0.5
3,473,509 - HP15_3313 0.80 -0.3
3,473,611 + HP15_3313 0.89 -0.2
3,473,743 - -1.2
3,473,751 + -1.3
3,473,766 + -1.2
3,473,767 + -0.7
3,473,863 - HP15_3314 0.13 -0.9
3,473,876 - HP15_3314 0.14 -1.3
3,473,960 + HP15_3314 0.20 -0.6
3,473,965 + HP15_3314 0.20 -0.9
3,473,971 - HP15_3314 0.21 -1.8
3,473,973 + HP15_3314 0.21 +1.4
3,473,976 - HP15_3314 0.21 -0.1
3,474,091 - HP15_3314 0.30 +0.8
3,474,152 + HP15_3314 0.35 -1.6
3,474,160 - HP15_3314 0.35 -0.4
3,474,160 - HP15_3314 0.35 -0.6
3,474,238 + HP15_3314 0.41 -1.0
3,474,267 - HP15_3314 0.44 -2.3
3,474,456 + HP15_3314 0.58 -1.0
3,474,641 - HP15_3314 0.72 -0.2
3,474,672 - HP15_3314 0.74 -1.1
3,474,846 + HP15_3314 0.88 -0.9
3,474,854 - HP15_3314 0.88 -1.8
3,474,856 + HP15_3314 0.89 -1.2
3,475,072 + -0.4
3,475,169 + -0.0
3,475,258 + -0.1
3,475,271 - -0.3
3,475,271 - +0.5
3,475,322 + -1.1
3,475,416 + HP15_3315 0.18 +0.1
3,475,416 + HP15_3315 0.18 +2.1
3,475,416 + HP15_3315 0.18 +0.2
3,475,424 - HP15_3315 0.18 -1.3
3,475,451 - HP15_3315 0.21 -0.2
3,475,463 + HP15_3315 0.22 +0.2
3,475,492 + HP15_3315 0.24 -0.2
3,475,521 - HP15_3315 0.26 -0.0
3,475,583 - HP15_3315 0.32 +0.7
3,475,604 + HP15_3315 0.34 -0.0
3,475,648 + HP15_3315 0.37 -0.1
3,475,765 - HP15_3315 0.47 +0.8
3,475,878 + HP15_3315 0.57 -0.2
3,475,886 - HP15_3315 0.58 +0.5
3,475,915 + HP15_3315 0.60 +0.6
3,475,953 + HP15_3315 0.63 +0.2

Or see this region's nucleotide sequence