Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3290 and HP15_3291 are separated by 164 nucleotides HP15_3291 and HP15_3292 are separated by 153 nucleotides HP15_3292 and HP15_3293 are separated by 36 nucleotides
HP15_3290: HP15_3290 - anthranilate phosphoribosyltransferase, at 3,448,194 to 3,449,222
_3290
HP15_3291: HP15_3291 - indole-3-glycerol phosphate synthase, at 3,449,387 to 3,450,208
_3291
HP15_3292: HP15_3292 - conserved hypothetical protein, at 3,450,362 to 3,450,973
_3292
HP15_3293: HP15_3293 - glutathione S-transferase, N-terminal domain protein, at 3,451,010 to 3,451,627
_3293
Position (kb)
3449
3450
3451 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3448.405 kb on - strand, within HP15_3290 at 3448.450 kb on + strand, within HP15_3290 at 3448.706 kb on - strand, within HP15_3290 at 3448.788 kb on + strand, within HP15_3290 at 3448.891 kb on - strand, within HP15_3290 at 3449.016 kb on - strand, within HP15_3290 at 3449.185 kb on + strand at 3449.356 kb on - strand at 3449.387 kb on - strand at 3450.000 kb on + strand, within HP15_3291 at 3450.024 kb on + strand, within HP15_3291 at 3450.024 kb on - strand, within HP15_3291 at 3450.032 kb on - strand, within HP15_3291 at 3450.223 kb on - strand at 3450.267 kb on - strand at 3450.321 kb on + strand at 3450.321 kb on + strand at 3450.321 kb on - strand at 3450.379 kb on - strand at 3450.567 kb on + strand, within HP15_3292 at 3450.621 kb on + strand, within HP15_3292 at 3450.648 kb on - strand, within HP15_3292 at 3450.704 kb on + strand, within HP15_3292 at 3450.736 kb on + strand, within HP15_3292 at 3450.814 kb on + strand, within HP15_3292 at 3450.843 kb on + strand, within HP15_3292 at 3450.861 kb on + strand, within HP15_3292 at 3450.914 kb on - strand at 3450.990 kb on - strand at 3451.016 kb on - strand at 3451.016 kb on - strand at 3451.016 kb on - strand at 3451.021 kb on - strand at 3451.021 kb on - strand at 3451.026 kb on - strand at 3451.077 kb on - strand, within HP15_3293 at 3451.089 kb on + strand, within HP15_3293 at 3451.147 kb on + strand, within HP15_3293 at 3451.157 kb on + strand, within HP15_3293 at 3451.158 kb on + strand, within HP15_3293 at 3451.165 kb on - strand, within HP15_3293
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 3,448,405 - HP15_3290 0.21 -2.0 3,448,450 + HP15_3290 0.25 -1.8 3,448,706 - HP15_3290 0.50 -1.8 3,448,788 + HP15_3290 0.58 +0.4 3,448,891 - HP15_3290 0.68 -1.8 3,449,016 - HP15_3290 0.80 -2.5 3,449,185 + -0.2 3,449,356 - -0.6 3,449,387 - -0.5 3,450,000 + HP15_3291 0.75 -2.4 3,450,024 + HP15_3291 0.77 -3.2 3,450,024 - HP15_3291 0.77 -2.7 3,450,032 - HP15_3291 0.78 -2.7 3,450,223 - -0.2 3,450,267 - -0.1 3,450,321 + -0.2 3,450,321 + +0.3 3,450,321 - -0.9 3,450,379 - -0.2 3,450,567 + HP15_3292 0.33 +0.8 3,450,621 + HP15_3292 0.42 -0.1 3,450,648 - HP15_3292 0.47 +0.0 3,450,704 + HP15_3292 0.56 -0.0 3,450,736 + HP15_3292 0.61 -0.3 3,450,814 + HP15_3292 0.74 -0.1 3,450,843 + HP15_3292 0.79 +0.0 3,450,861 + HP15_3292 0.82 +0.3 3,450,914 - -0.6 3,450,990 - +1.4 3,451,016 - +0.7 3,451,016 - +0.6 3,451,016 - -0.6 3,451,021 - -0.2 3,451,021 - +0.3 3,451,026 - +0.3 3,451,077 - HP15_3293 0.11 -1.5 3,451,089 + HP15_3293 0.13 -0.3 3,451,147 + HP15_3293 0.22 -0.4 3,451,157 + HP15_3293 0.24 -0.0 3,451,158 + HP15_3293 0.24 +0.4 3,451,165 - HP15_3293 0.25 -0.1
Or see this region's nucleotide sequence