Strain Fitness in Marinobacter adhaerens HP15 around HP15_3213

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3211 and HP15_3212 overlap by 19 nucleotidesHP15_3212 and HP15_3213 are separated by 282 nucleotidesHP15_3213 and HP15_3214 are separated by 148 nucleotidesHP15_3214 and HP15_3215 are separated by 119 nucleotides HP15_3211: HP15_3211 - 5-formyltetrahydrofolate cyclo-ligase, at 3,361,999 to 3,362,682 _3211 HP15_3212: HP15_3212 - secreted protein, at 3,362,664 to 3,362,825 _3212 HP15_3213: HP15_3213 - threonine dehydratase biosynthetic, at 3,363,108 to 3,364,643 _3213 HP15_3214: HP15_3214 - ribose-5-phosphate isomerase A, at 3,364,792 to 3,365,475 _3214 HP15_3215: HP15_3215 - acyl-CoA dehydrogenase domain protein, at 3,365,595 to 3,366,761 _3215 Position (kb) 3363 3364 3365Strain fitness (log2 ratio) -3 -2 -1 0 1at 3362.272 kb on + strand, within HP15_3211at 3362.280 kb on - strand, within HP15_3211at 3362.297 kb on - strand, within HP15_3211at 3362.297 kb on - strand, within HP15_3211at 3362.487 kb on + strand, within HP15_3211at 3362.630 kb on + strandat 3362.683 kb on + strand, within HP15_3212at 3362.732 kb on - strand, within HP15_3212at 3362.815 kb on - strandat 3362.828 kb on + strandat 3363.002 kb on - strandat 3363.100 kb on - strandat 3363.121 kb on + strandat 3363.129 kb on - strandat 3363.129 kb on - strandat 3363.218 kb on - strandat 3363.218 kb on - strandat 3363.226 kb on - strandat 3363.255 kb on + strandat 3363.263 kb on - strand, within HP15_3213at 3363.288 kb on + strand, within HP15_3213at 3363.296 kb on - strand, within HP15_3213at 3363.735 kb on - strand, within HP15_3213at 3363.800 kb on - strand, within HP15_3213at 3363.961 kb on + strand, within HP15_3213at 3364.069 kb on + strand, within HP15_3213at 3364.117 kb on - strand, within HP15_3213at 3364.218 kb on - strand, within HP15_3213at 3364.308 kb on + strand, within HP15_3213at 3364.316 kb on - strand, within HP15_3213at 3364.336 kb on + strand, within HP15_3213at 3364.393 kb on + strand, within HP15_3213at 3364.436 kb on - strand, within HP15_3213at 3364.436 kb on - strand, within HP15_3213at 3364.461 kb on - strand, within HP15_3213at 3364.549 kb on + strandat 3364.572 kb on + strandat 3364.572 kb on + strandat 3364.672 kb on + strandat 3364.747 kb on - strandat 3365.612 kb on + strandat 3365.616 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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3,362,272 + HP15_3211 0.40 -0.8
3,362,280 - HP15_3211 0.41 -1.2
3,362,297 - HP15_3211 0.44 +0.8
3,362,297 - HP15_3211 0.44 -1.1
3,362,487 + HP15_3211 0.71 -0.9
3,362,630 + -1.4
3,362,683 + HP15_3212 0.12 -0.1
3,362,732 - HP15_3212 0.42 -0.7
3,362,815 - -0.9
3,362,828 + -0.7
3,363,002 - -0.4
3,363,100 - -1.2
3,363,121 + -1.5
3,363,129 - -0.8
3,363,129 - +0.5
3,363,218 - -0.8
3,363,218 - -0.8
3,363,226 - -0.2
3,363,255 + +0.1
3,363,263 - HP15_3213 0.10 -1.8
3,363,288 + HP15_3213 0.12 -1.7
3,363,296 - HP15_3213 0.12 -0.4
3,363,735 - HP15_3213 0.41 -1.8
3,363,800 - HP15_3213 0.45 -1.2
3,363,961 + HP15_3213 0.56 -1.5
3,364,069 + HP15_3213 0.63 -3.2
3,364,117 - HP15_3213 0.66 -1.8
3,364,218 - HP15_3213 0.72 -0.5
3,364,308 + HP15_3213 0.78 -1.8
3,364,316 - HP15_3213 0.79 -2.2
3,364,336 + HP15_3213 0.80 -0.8
3,364,393 + HP15_3213 0.84 -1.0
3,364,436 - HP15_3213 0.86 -0.7
3,364,436 - HP15_3213 0.86 -0.1
3,364,461 - HP15_3213 0.88 +0.0
3,364,549 + -1.0
3,364,572 + -1.7
3,364,572 + +0.4
3,364,672 + -1.4
3,364,747 - +0.1
3,365,612 + -0.5
3,365,616 - -0.2

Or see this region's nucleotide sequence