Strain Fitness in Marinobacter adhaerens HP15 around HP15_3107

Experiment: L-Proline (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3106 and HP15_3107 are separated by 583 nucleotidesHP15_3107 and HP15_3108 are separated by 801 nucleotides HP15_3106: HP15_3106 - phage repressor, at 3,256,589 to 3,257,266 _3106 HP15_3107: HP15_3107 - hypothetical protein, at 3,257,850 to 3,257,981 _3107 HP15_3108: HP15_3108 - hypothetical protein, at 3,258,783 to 3,259,013 _3108 Position (kb) 3257 3258Strain fitness (log2 ratio) -1 0 1 2at 3257.300 kb on - strandat 3257.343 kb on + strandat 3257.503 kb on + strandat 3257.664 kb on + strandat 3257.812 kb on - strandat 3257.936 kb on + strand, within HP15_3107at 3258.111 kb on - strandat 3258.135 kb on + strandat 3258.135 kb on + strandat 3258.143 kb on - strandat 3258.259 kb on - strandat 3258.323 kb on - strandat 3258.392 kb on - strandat 3258.425 kb on + strandat 3258.462 kb on - strandat 3258.602 kb on + strandat 3258.612 kb on - strandat 3258.787 kb on + strandat 3258.860 kb on + strand, within HP15_3108

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
remove
3,257,300 - -0.1
3,257,343 + +0.5
3,257,503 + +2.0
3,257,664 + +0.0
3,257,812 - +0.6
3,257,936 + HP15_3107 0.65 -1.0
3,258,111 - +1.0
3,258,135 + +0.3
3,258,135 + -0.0
3,258,143 - -0.3
3,258,259 - +0.3
3,258,323 - +0.3
3,258,392 - +0.4
3,258,425 + -0.2
3,258,462 - -1.6
3,258,602 + +0.1
3,258,612 - +0.5
3,258,787 + +0.2
3,258,860 + HP15_3108 0.33 +1.0

Or see this region's nucleotide sequence