Strain Fitness in Marinobacter adhaerens HP15 around HP15_3087

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3084 and HP15_3085 are separated by 104 nucleotidesHP15_3085 and HP15_3086 are separated by 122 nucleotidesHP15_3086 and HP15_3087 overlap by 7 nucleotidesHP15_3087 and HP15_3088 overlap by 4 nucleotidesHP15_3088 and HP15_3089 are separated by 72 nucleotides HP15_3084: HP15_3084 - DNA repair protein RecN, at 3,239,819 to 3,241,498 _3084 HP15_3085: HP15_3085 - ferric-uptake regulator, at 3,241,603 to 3,242,013 _3085 HP15_3086: HP15_3086 - outer membrane lipoprotein OmlA, at 3,242,136 to 3,242,462 _3086 HP15_3087: HP15_3087 - protein belonging to uncharacterized protein family UPF0125, at 3,242,456 to 3,242,746 _3087 HP15_3088: HP15_3088 - oligoketide cyclase/lipid transport protein, at 3,242,743 to 3,243,189 _3088 HP15_3089: HP15_3089 - sodium-dependent transporter family protein, at 3,243,262 to 3,244,821 _3089 Position (kb) 3242 3243Strain fitness (log2 ratio) -1 0 1 2at 3241.459 kb on - strandat 3241.487 kb on + strandat 3241.495 kb on - strandat 3241.495 kb on - strandat 3241.514 kb on + strandat 3241.547 kb on - strandat 3241.598 kb on - strandat 3242.409 kb on + strand, within HP15_3086at 3242.456 kb on + strandat 3242.538 kb on - strand, within HP15_3087at 3242.562 kb on - strand, within HP15_3087at 3242.659 kb on + strand, within HP15_3087at 3242.678 kb on - strand, within HP15_3087at 3242.767 kb on - strandat 3242.914 kb on - strand, within HP15_3088at 3242.978 kb on + strand, within HP15_3088at 3243.041 kb on + strand, within HP15_3088at 3243.159 kb on - strandat 3243.195 kb on + strandat 3243.479 kb on - strand, within HP15_3089at 3243.489 kb on - strand, within HP15_3089at 3243.559 kb on + strand, within HP15_3089at 3243.587 kb on - strand, within HP15_3089at 3243.603 kb on + strand, within HP15_3089at 3243.622 kb on - strand, within HP15_3089at 3243.637 kb on - strand, within HP15_3089at 3243.656 kb on + strand, within HP15_3089at 3243.727 kb on + strand, within HP15_3089

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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3,241,459 - -0.3
3,241,487 + +0.3
3,241,495 - +0.1
3,241,495 - +0.3
3,241,514 + -0.4
3,241,547 - -0.2
3,241,598 - +0.1
3,242,409 + HP15_3086 0.83 +0.4
3,242,456 + +0.1
3,242,538 - HP15_3087 0.28 -1.0
3,242,562 - HP15_3087 0.36 +0.2
3,242,659 + HP15_3087 0.70 -1.0
3,242,678 - HP15_3087 0.76 -1.2
3,242,767 - +0.3
3,242,914 - HP15_3088 0.38 +2.1
3,242,978 + HP15_3088 0.53 -0.1
3,243,041 + HP15_3088 0.67 -0.2
3,243,159 - -0.1
3,243,195 + -1.2
3,243,479 - HP15_3089 0.14 -0.4
3,243,489 - HP15_3089 0.15 -0.6
3,243,559 + HP15_3089 0.19 +0.1
3,243,587 - HP15_3089 0.21 +0.1
3,243,603 + HP15_3089 0.22 +0.1
3,243,622 - HP15_3089 0.23 +0.2
3,243,637 - HP15_3089 0.24 -0.2
3,243,656 + HP15_3089 0.25 +0.1
3,243,727 + HP15_3089 0.30 +0.3

Or see this region's nucleotide sequence