Strain Fitness in Marinobacter adhaerens HP15 around HP15_2996

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2994 and HP15_2995 are separated by 9 nucleotidesHP15_2995 and HP15_2996 are separated by 107 nucleotidesHP15_2996 and HP15_2997 are separated by 427 nucleotides HP15_2994: HP15_2994 - polynucleotide adenylyltransferase/metal dependent phosphohydrolase, at 3,137,372 to 3,138,493 _2994 HP15_2995: HP15_2995 - short-chain dehydrogenase/reductase SDR, at 3,138,503 to 3,139,249 _2995 HP15_2996: HP15_2996 - acetyl-CoA acetyltransferase, at 3,139,357 to 3,140,553 _2996 HP15_2997: HP15_2997 - hemin ABC transporter, ATP-binding protein HutD, at 3,140,981 to 3,141,802 _2997 Position (kb) 3139 3140 3141Strain fitness (log2 ratio) -2 -1 0 1at 3138.487 kb on + strandat 3138.495 kb on - strandat 3138.573 kb on - strandat 3138.587 kb on + strand, within HP15_2995at 3138.676 kb on - strand, within HP15_2995at 3138.745 kb on - strand, within HP15_2995at 3138.789 kb on + strand, within HP15_2995at 3138.967 kb on - strand, within HP15_2995at 3139.052 kb on - strand, within HP15_2995at 3139.056 kb on + strand, within HP15_2995at 3139.127 kb on + strand, within HP15_2995at 3139.183 kb on - strandat 3139.230 kb on + strandat 3139.404 kb on + strandat 3139.458 kb on + strandat 3139.474 kb on - strandat 3139.657 kb on + strand, within HP15_2996at 3139.714 kb on + strand, within HP15_2996at 3139.826 kb on + strand, within HP15_2996at 3139.980 kb on - strand, within HP15_2996at 3139.992 kb on + strand, within HP15_2996at 3139.992 kb on + strand, within HP15_2996at 3140.050 kb on + strand, within HP15_2996at 3140.058 kb on - strand, within HP15_2996at 3140.156 kb on - strand, within HP15_2996at 3140.273 kb on + strand, within HP15_2996at 3140.338 kb on + strand, within HP15_2996at 3140.384 kb on + strand, within HP15_2996at 3140.494 kb on + strandat 3140.574 kb on - strandat 3140.666 kb on - strandat 3140.713 kb on - strandat 3140.735 kb on - strandat 3140.947 kb on + strandat 3141.024 kb on + strandat 3141.042 kb on - strandat 3141.054 kb on + strandat 3141.055 kb on + strandat 3141.099 kb on - strand, within HP15_2997at 3141.116 kb on - strand, within HP15_2997at 3141.116 kb on - strand, within HP15_2997at 3141.126 kb on - strand, within HP15_2997at 3141.208 kb on + strand, within HP15_2997at 3141.208 kb on + strand, within HP15_2997at 3141.340 kb on + strand, within HP15_2997at 3141.348 kb on - strand, within HP15_2997at 3141.348 kb on - strand, within HP15_2997at 3141.348 kb on - strand, within HP15_2997at 3141.399 kb on + strand, within HP15_2997at 3141.399 kb on + strand, within HP15_2997at 3141.407 kb on - strand, within HP15_2997at 3141.483 kb on - strand, within HP15_2997at 3141.495 kb on + strand, within HP15_2997

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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3,138,487 + +0.2
3,138,495 - +0.4
3,138,573 - +0.3
3,138,587 + HP15_2995 0.11 +0.1
3,138,676 - HP15_2995 0.23 +0.0
3,138,745 - HP15_2995 0.32 -0.5
3,138,789 + HP15_2995 0.38 +1.0
3,138,967 - HP15_2995 0.62 +0.0
3,139,052 - HP15_2995 0.73 +0.2
3,139,056 + HP15_2995 0.74 -0.3
3,139,127 + HP15_2995 0.84 -0.6
3,139,183 - -0.4
3,139,230 + +0.4
3,139,404 + -0.4
3,139,458 + -0.9
3,139,474 - -1.0
3,139,657 + HP15_2996 0.25 -1.8
3,139,714 + HP15_2996 0.30 -0.7
3,139,826 + HP15_2996 0.39 -1.0
3,139,980 - HP15_2996 0.52 -0.8
3,139,992 + HP15_2996 0.53 -0.4
3,139,992 + HP15_2996 0.53 +0.5
3,140,050 + HP15_2996 0.58 -0.6
3,140,058 - HP15_2996 0.59 -1.2
3,140,156 - HP15_2996 0.67 -1.2
3,140,273 + HP15_2996 0.77 -0.2
3,140,338 + HP15_2996 0.82 -0.8
3,140,384 + HP15_2996 0.86 -0.5
3,140,494 + -2.0
3,140,574 - -1.0
3,140,666 - -1.8
3,140,713 - -0.2
3,140,735 - -1.6
3,140,947 + -1.2
3,141,024 + +0.6
3,141,042 - +0.1
3,141,054 + -0.8
3,141,055 + -0.7
3,141,099 - HP15_2997 0.14 -0.1
3,141,116 - HP15_2997 0.16 -0.6
3,141,116 - HP15_2997 0.16 -0.2
3,141,126 - HP15_2997 0.18 -1.0
3,141,208 + HP15_2997 0.28 -0.2
3,141,208 + HP15_2997 0.28 -0.1
3,141,340 + HP15_2997 0.44 -0.1
3,141,348 - HP15_2997 0.45 -0.3
3,141,348 - HP15_2997 0.45 +0.1
3,141,348 - HP15_2997 0.45 -0.2
3,141,399 + HP15_2997 0.51 +0.1
3,141,399 + HP15_2997 0.51 -0.8
3,141,407 - HP15_2997 0.52 +0.3
3,141,483 - HP15_2997 0.61 -0.3
3,141,495 + HP15_2997 0.63 -0.3

Or see this region's nucleotide sequence