Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2994 and HP15_2995 are separated by 9 nucleotides HP15_2995 and HP15_2996 are separated by 107 nucleotides HP15_2996 and HP15_2997 are separated by 427 nucleotides
HP15_2994: HP15_2994 - polynucleotide adenylyltransferase/metal dependent phosphohydrolase, at 3,137,372 to 3,138,493
_2994
HP15_2995: HP15_2995 - short-chain dehydrogenase/reductase SDR, at 3,138,503 to 3,139,249
_2995
HP15_2996: HP15_2996 - acetyl-CoA acetyltransferase, at 3,139,357 to 3,140,553
_2996
HP15_2997: HP15_2997 - hemin ABC transporter, ATP-binding protein HutD, at 3,140,981 to 3,141,802
_2997
Position (kb)
3139
3140
3141 Strain fitness (log2 ratio)
-2
-1
0
1 at 3138.487 kb on + strand at 3138.495 kb on - strand at 3138.573 kb on - strand at 3138.587 kb on + strand, within HP15_2995 at 3138.676 kb on - strand, within HP15_2995 at 3138.745 kb on - strand, within HP15_2995 at 3138.789 kb on + strand, within HP15_2995 at 3138.967 kb on - strand, within HP15_2995 at 3139.052 kb on - strand, within HP15_2995 at 3139.056 kb on + strand, within HP15_2995 at 3139.127 kb on + strand, within HP15_2995 at 3139.183 kb on - strand at 3139.230 kb on + strand at 3139.404 kb on + strand at 3139.458 kb on + strand at 3139.474 kb on - strand at 3139.657 kb on + strand, within HP15_2996 at 3139.714 kb on + strand, within HP15_2996 at 3139.826 kb on + strand, within HP15_2996 at 3139.980 kb on - strand, within HP15_2996 at 3139.992 kb on + strand, within HP15_2996 at 3139.992 kb on + strand, within HP15_2996 at 3140.050 kb on + strand, within HP15_2996 at 3140.058 kb on - strand, within HP15_2996 at 3140.156 kb on - strand, within HP15_2996 at 3140.273 kb on + strand, within HP15_2996 at 3140.338 kb on + strand, within HP15_2996 at 3140.384 kb on + strand, within HP15_2996 at 3140.494 kb on + strand at 3140.574 kb on - strand at 3140.666 kb on - strand at 3140.713 kb on - strand at 3140.735 kb on - strand at 3140.947 kb on + strand at 3141.024 kb on + strand at 3141.042 kb on - strand at 3141.054 kb on + strand at 3141.055 kb on + strand at 3141.099 kb on - strand, within HP15_2997 at 3141.116 kb on - strand, within HP15_2997 at 3141.116 kb on - strand, within HP15_2997 at 3141.126 kb on - strand, within HP15_2997 at 3141.208 kb on + strand, within HP15_2997 at 3141.208 kb on + strand, within HP15_2997 at 3141.340 kb on + strand, within HP15_2997 at 3141.348 kb on - strand, within HP15_2997 at 3141.348 kb on - strand, within HP15_2997 at 3141.348 kb on - strand, within HP15_2997 at 3141.399 kb on + strand, within HP15_2997 at 3141.399 kb on + strand, within HP15_2997 at 3141.407 kb on - strand, within HP15_2997 at 3141.483 kb on - strand, within HP15_2997 at 3141.495 kb on + strand, within HP15_2997
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 3,138,487 + +0.2 3,138,495 - +0.4 3,138,573 - +0.3 3,138,587 + HP15_2995 0.11 +0.1 3,138,676 - HP15_2995 0.23 +0.0 3,138,745 - HP15_2995 0.32 -0.5 3,138,789 + HP15_2995 0.38 +1.0 3,138,967 - HP15_2995 0.62 +0.0 3,139,052 - HP15_2995 0.73 +0.2 3,139,056 + HP15_2995 0.74 -0.3 3,139,127 + HP15_2995 0.84 -0.6 3,139,183 - -0.4 3,139,230 + +0.4 3,139,404 + -0.4 3,139,458 + -0.9 3,139,474 - -1.0 3,139,657 + HP15_2996 0.25 -1.8 3,139,714 + HP15_2996 0.30 -0.7 3,139,826 + HP15_2996 0.39 -1.0 3,139,980 - HP15_2996 0.52 -0.8 3,139,992 + HP15_2996 0.53 -0.4 3,139,992 + HP15_2996 0.53 +0.5 3,140,050 + HP15_2996 0.58 -0.6 3,140,058 - HP15_2996 0.59 -1.2 3,140,156 - HP15_2996 0.67 -1.2 3,140,273 + HP15_2996 0.77 -0.2 3,140,338 + HP15_2996 0.82 -0.8 3,140,384 + HP15_2996 0.86 -0.5 3,140,494 + -2.0 3,140,574 - -1.0 3,140,666 - -1.8 3,140,713 - -0.2 3,140,735 - -1.6 3,140,947 + -1.2 3,141,024 + +0.6 3,141,042 - +0.1 3,141,054 + -0.8 3,141,055 + -0.7 3,141,099 - HP15_2997 0.14 -0.1 3,141,116 - HP15_2997 0.16 -0.6 3,141,116 - HP15_2997 0.16 -0.2 3,141,126 - HP15_2997 0.18 -1.0 3,141,208 + HP15_2997 0.28 -0.2 3,141,208 + HP15_2997 0.28 -0.1 3,141,340 + HP15_2997 0.44 -0.1 3,141,348 - HP15_2997 0.45 -0.3 3,141,348 - HP15_2997 0.45 +0.1 3,141,348 - HP15_2997 0.45 -0.2 3,141,399 + HP15_2997 0.51 +0.1 3,141,399 + HP15_2997 0.51 -0.8 3,141,407 - HP15_2997 0.52 +0.3 3,141,483 - HP15_2997 0.61 -0.3 3,141,495 + HP15_2997 0.63 -0.3
Or see this region's nucleotide sequence