Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2963 and HP15_2964 overlap by 11 nucleotides HP15_2964 and HP15_2965 are separated by 47 nucleotides HP15_2965 and HP15_2966 overlap by 4 nucleotides
HP15_2963: HP15_2963 - phosphoglycolate phosphatase, at 3,108,035 to 3,109,684
_2963
HP15_2964: HP15_2964 - hypothetical protein, at 3,109,674 to 3,109,802
_2964
HP15_2965: HP15_2965 - inner membrane protein, at 3,109,850 to 3,110,689
_2965
HP15_2966: HP15_2966 - electron transport protein SCO1/SenC, at 3,110,686 to 3,111,279
_2966
Position (kb)
3109
3110 Strain fitness (log2 ratio)
-1
0
1 at 3108.763 kb on - strand, within HP15_2963 at 3108.924 kb on - strand, within HP15_2963 at 3108.924 kb on - strand, within HP15_2963 at 3108.957 kb on - strand, within HP15_2963 at 3108.970 kb on + strand, within HP15_2963 at 3109.140 kb on + strand, within HP15_2963 at 3109.182 kb on - strand, within HP15_2963 at 3109.185 kb on + strand, within HP15_2963 at 3109.249 kb on + strand, within HP15_2963 at 3109.307 kb on - strand, within HP15_2963 at 3109.332 kb on + strand, within HP15_2963 at 3109.356 kb on + strand, within HP15_2963 at 3109.396 kb on - strand, within HP15_2963 at 3109.540 kb on - strand at 3109.600 kb on - strand at 3109.637 kb on - strand at 3109.723 kb on + strand, within HP15_2964 at 3109.764 kb on - strand, within HP15_2964 at 3109.835 kb on + strand at 3109.835 kb on + strand at 3109.840 kb on + strand at 3109.840 kb on + strand at 3109.848 kb on - strand at 3109.848 kb on - strand at 3109.856 kb on + strand at 3109.873 kb on + strand at 3109.905 kb on + strand at 3109.932 kb on - strand at 3109.942 kb on + strand, within HP15_2965 at 3109.966 kb on + strand, within HP15_2965 at 3109.984 kb on - strand, within HP15_2965 at 3109.997 kb on - strand, within HP15_2965 at 3110.098 kb on + strand, within HP15_2965 at 3110.122 kb on + strand, within HP15_2965 at 3110.122 kb on + strand, within HP15_2965 at 3110.130 kb on - strand, within HP15_2965 at 3110.130 kb on - strand, within HP15_2965 at 3110.192 kb on + strand, within HP15_2965 at 3110.458 kb on - strand, within HP15_2965 at 3110.521 kb on - strand, within HP15_2965 at 3110.530 kb on + strand, within HP15_2965 at 3110.585 kb on - strand, within HP15_2965 at 3110.777 kb on + strand, within HP15_2966
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 3,108,763 - HP15_2963 0.44 +0.3 3,108,924 - HP15_2963 0.54 -0.5 3,108,924 - HP15_2963 0.54 +0.6 3,108,957 - HP15_2963 0.56 -0.1 3,108,970 + HP15_2963 0.57 -1.3 3,109,140 + HP15_2963 0.67 -0.3 3,109,182 - HP15_2963 0.70 -0.6 3,109,185 + HP15_2963 0.70 +0.2 3,109,249 + HP15_2963 0.74 -0.6 3,109,307 - HP15_2963 0.77 -0.4 3,109,332 + HP15_2963 0.79 +0.1 3,109,356 + HP15_2963 0.80 +0.2 3,109,396 - HP15_2963 0.82 +0.1 3,109,540 - +0.1 3,109,600 - +0.1 3,109,637 - -0.4 3,109,723 + HP15_2964 0.38 -1.0 3,109,764 - HP15_2964 0.70 -0.6 3,109,835 + -0.0 3,109,835 + +0.3 3,109,840 + -0.2 3,109,840 + -0.3 3,109,848 - +0.2 3,109,848 - +0.2 3,109,856 + -0.3 3,109,873 + +1.2 3,109,905 + +0.9 3,109,932 - +0.0 3,109,942 + HP15_2965 0.11 -0.0 3,109,966 + HP15_2965 0.14 -0.2 3,109,984 - HP15_2965 0.16 -0.1 3,109,997 - HP15_2965 0.17 -0.2 3,110,098 + HP15_2965 0.30 -0.8 3,110,122 + HP15_2965 0.32 -0.7 3,110,122 + HP15_2965 0.32 -0.3 3,110,130 - HP15_2965 0.33 +0.1 3,110,130 - HP15_2965 0.33 +0.5 3,110,192 + HP15_2965 0.41 -0.6 3,110,458 - HP15_2965 0.72 +0.9 3,110,521 - HP15_2965 0.80 +0.0 3,110,530 + HP15_2965 0.81 +0.2 3,110,585 - HP15_2965 0.88 -0.3 3,110,777 + HP15_2966 0.15 -0.0
Or see this region's nucleotide sequence