Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2873 and HP15_2874 overlap by 4 nucleotides HP15_2874 and HP15_2875 are separated by 10 nucleotides HP15_2875 and HP15_2876 are separated by 41 nucleotides
HP15_2873: HP15_2873 - urease subunit alpha-like protein, at 3,009,796 to 3,011,499
_2873
HP15_2874: HP15_2874 - urease subunit beta, at 3,011,496 to 3,011,813
_2874
HP15_2875: HP15_2875 - urease gamma subunit, at 3,011,824 to 3,012,126
_2875
HP15_2876: HP15_2876 - urease accessory protein UreD, at 3,012,168 to 3,013,064
_2876
Position (kb)
3011
3012 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3010.533 kb on + strand, within HP15_2873 at 3010.536 kb on - strand, within HP15_2873 at 3010.559 kb on + strand, within HP15_2873 at 3010.579 kb on + strand, within HP15_2873 at 3010.589 kb on + strand, within HP15_2873 at 3010.589 kb on + strand, within HP15_2873 at 3010.589 kb on + strand, within HP15_2873 at 3010.589 kb on + strand, within HP15_2873 at 3010.589 kb on + strand, within HP15_2873 at 3010.589 kb on + strand, within HP15_2873 at 3010.589 kb on + strand, within HP15_2873 at 3010.589 kb on + strand, within HP15_2873 at 3010.589 kb on + strand, within HP15_2873 at 3010.589 kb on + strand, within HP15_2873 at 3010.592 kb on - strand, within HP15_2873 at 3010.597 kb on - strand, within HP15_2873 at 3010.597 kb on - strand, within HP15_2873 at 3010.597 kb on - strand, within HP15_2873 at 3010.597 kb on - strand, within HP15_2873 at 3010.597 kb on - strand, within HP15_2873 at 3010.599 kb on + strand, within HP15_2873 at 3010.633 kb on - strand, within HP15_2873 at 3010.810 kb on + strand, within HP15_2873 at 3010.892 kb on - strand, within HP15_2873 at 3010.892 kb on - strand, within HP15_2873 at 3010.892 kb on - strand, within HP15_2873 at 3010.915 kb on - strand, within HP15_2873 at 3011.011 kb on + strand, within HP15_2873 at 3011.067 kb on - strand, within HP15_2873 at 3011.069 kb on + strand, within HP15_2873 at 3011.159 kb on - strand, within HP15_2873 at 3011.278 kb on + strand, within HP15_2873 at 3011.310 kb on - strand, within HP15_2873 at 3011.336 kb on - strand at 3011.342 kb on - strand at 3011.421 kb on + strand at 3011.422 kb on - strand at 3011.474 kb on + strand at 3011.515 kb on - strand at 3011.567 kb on + strand, within HP15_2874 at 3011.573 kb on + strand, within HP15_2874 at 3011.586 kb on + strand, within HP15_2874 at 3011.594 kb on - strand, within HP15_2874 at 3011.699 kb on - strand, within HP15_2874 at 3011.706 kb on + strand, within HP15_2874 at 3011.940 kb on - strand, within HP15_2875 at 3011.962 kb on - strand, within HP15_2875 at 3012.018 kb on - strand, within HP15_2875 at 3012.018 kb on - strand, within HP15_2875 at 3012.023 kb on - strand, within HP15_2875 at 3012.068 kb on + strand, within HP15_2875 at 3012.207 kb on + strand at 3012.212 kb on + strand at 3012.212 kb on + strand at 3012.212 kb on + strand at 3012.212 kb on + strand at 3012.217 kb on + strand at 3012.222 kb on + strand at 3012.230 kb on - strand at 3012.285 kb on + strand, within HP15_2876 at 3012.388 kb on + strand, within HP15_2876 at 3012.401 kb on + strand, within HP15_2876 at 3012.417 kb on + strand, within HP15_2876 at 3012.433 kb on + strand, within HP15_2876 at 3012.618 kb on + strand, within HP15_2876 at 3012.636 kb on - strand, within HP15_2876 at 3012.694 kb on - strand, within HP15_2876 at 3012.722 kb on + strand, within HP15_2876 at 3012.736 kb on + strand, within HP15_2876 at 3012.744 kb on - strand, within HP15_2876 at 3012.773 kb on + strand, within HP15_2876 at 3012.785 kb on - strand, within HP15_2876 at 3012.812 kb on + strand, within HP15_2876
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 3,010,533 + HP15_2873 0.43 -1.1 3,010,536 - HP15_2873 0.43 +0.2 3,010,559 + HP15_2873 0.45 +0.3 3,010,579 + HP15_2873 0.46 +1.9 3,010,589 + HP15_2873 0.47 +0.3 3,010,589 + HP15_2873 0.47 -0.3 3,010,589 + HP15_2873 0.47 -0.9 3,010,589 + HP15_2873 0.47 +0.2 3,010,589 + HP15_2873 0.47 +0.9 3,010,589 + HP15_2873 0.47 +0.0 3,010,589 + HP15_2873 0.47 +0.5 3,010,589 + HP15_2873 0.47 +0.7 3,010,589 + HP15_2873 0.47 +0.7 3,010,589 + HP15_2873 0.47 +0.6 3,010,592 - HP15_2873 0.47 +0.4 3,010,597 - HP15_2873 0.47 +0.3 3,010,597 - HP15_2873 0.47 +0.1 3,010,597 - HP15_2873 0.47 -0.9 3,010,597 - HP15_2873 0.47 -1.6 3,010,597 - HP15_2873 0.47 +0.5 3,010,599 + HP15_2873 0.47 -0.6 3,010,633 - HP15_2873 0.49 -0.9 3,010,810 + HP15_2873 0.60 +0.3 3,010,892 - HP15_2873 0.64 +0.3 3,010,892 - HP15_2873 0.64 -0.5 3,010,892 - HP15_2873 0.64 +0.1 3,010,915 - HP15_2873 0.66 +0.5 3,011,011 + HP15_2873 0.71 -0.5 3,011,067 - HP15_2873 0.75 +0.7 3,011,069 + HP15_2873 0.75 -0.1 3,011,159 - HP15_2873 0.80 -0.3 3,011,278 + HP15_2873 0.87 +0.5 3,011,310 - HP15_2873 0.89 -0.6 3,011,336 - -0.1 3,011,342 - +0.1 3,011,421 + -0.1 3,011,422 - -0.5 3,011,474 + +0.5 3,011,515 - -0.1 3,011,567 + HP15_2874 0.22 -1.9 3,011,573 + HP15_2874 0.24 -0.9 3,011,586 + HP15_2874 0.28 -1.3 3,011,594 - HP15_2874 0.31 -0.0 3,011,699 - HP15_2874 0.64 -1.4 3,011,706 + HP15_2874 0.66 -0.2 3,011,940 - HP15_2875 0.38 -0.1 3,011,962 - HP15_2875 0.46 -0.8 3,012,018 - HP15_2875 0.64 -0.3 3,012,018 - HP15_2875 0.64 +0.5 3,012,023 - HP15_2875 0.66 +0.0 3,012,068 + HP15_2875 0.81 +0.1 3,012,207 + -0.0 3,012,212 + -0.1 3,012,212 + +0.2 3,012,212 + -0.1 3,012,212 + -0.9 3,012,217 + +0.2 3,012,222 + +0.6 3,012,230 - +0.1 3,012,285 + HP15_2876 0.13 -0.3 3,012,388 + HP15_2876 0.25 -0.5 3,012,401 + HP15_2876 0.26 +0.5 3,012,417 + HP15_2876 0.28 +0.5 3,012,433 + HP15_2876 0.30 -1.0 3,012,618 + HP15_2876 0.50 +0.3 3,012,636 - HP15_2876 0.52 +0.1 3,012,694 - HP15_2876 0.59 +0.5 3,012,722 + HP15_2876 0.62 +0.0 3,012,736 + HP15_2876 0.63 +0.6 3,012,744 - HP15_2876 0.64 +0.7 3,012,773 + HP15_2876 0.67 +0.5 3,012,785 - HP15_2876 0.69 -0.0 3,012,812 + HP15_2876 0.72 +2.3
Or see this region's nucleotide sequence