Strain Fitness in Marinobacter adhaerens HP15 around HP15_2874

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2873 and HP15_2874 overlap by 4 nucleotidesHP15_2874 and HP15_2875 are separated by 10 nucleotidesHP15_2875 and HP15_2876 are separated by 41 nucleotides HP15_2873: HP15_2873 - urease subunit alpha-like protein, at 3,009,796 to 3,011,499 _2873 HP15_2874: HP15_2874 - urease subunit beta, at 3,011,496 to 3,011,813 _2874 HP15_2875: HP15_2875 - urease gamma subunit, at 3,011,824 to 3,012,126 _2875 HP15_2876: HP15_2876 - urease accessory protein UreD, at 3,012,168 to 3,013,064 _2876 Position (kb) 3011 3012Strain fitness (log2 ratio) -2 -1 0 1 2at 3010.533 kb on + strand, within HP15_2873at 3010.536 kb on - strand, within HP15_2873at 3010.559 kb on + strand, within HP15_2873at 3010.579 kb on + strand, within HP15_2873at 3010.589 kb on + strand, within HP15_2873at 3010.589 kb on + strand, within HP15_2873at 3010.589 kb on + strand, within HP15_2873at 3010.589 kb on + strand, within HP15_2873at 3010.589 kb on + strand, within HP15_2873at 3010.589 kb on + strand, within HP15_2873at 3010.589 kb on + strand, within HP15_2873at 3010.589 kb on + strand, within HP15_2873at 3010.589 kb on + strand, within HP15_2873at 3010.589 kb on + strand, within HP15_2873at 3010.592 kb on - strand, within HP15_2873at 3010.597 kb on - strand, within HP15_2873at 3010.597 kb on - strand, within HP15_2873at 3010.597 kb on - strand, within HP15_2873at 3010.597 kb on - strand, within HP15_2873at 3010.597 kb on - strand, within HP15_2873at 3010.599 kb on + strand, within HP15_2873at 3010.633 kb on - strand, within HP15_2873at 3010.810 kb on + strand, within HP15_2873at 3010.892 kb on - strand, within HP15_2873at 3010.892 kb on - strand, within HP15_2873at 3010.892 kb on - strand, within HP15_2873at 3010.915 kb on - strand, within HP15_2873at 3011.011 kb on + strand, within HP15_2873at 3011.067 kb on - strand, within HP15_2873at 3011.069 kb on + strand, within HP15_2873at 3011.159 kb on - strand, within HP15_2873at 3011.278 kb on + strand, within HP15_2873at 3011.310 kb on - strand, within HP15_2873at 3011.336 kb on - strandat 3011.342 kb on - strandat 3011.421 kb on + strandat 3011.422 kb on - strandat 3011.474 kb on + strandat 3011.515 kb on - strandat 3011.567 kb on + strand, within HP15_2874at 3011.573 kb on + strand, within HP15_2874at 3011.586 kb on + strand, within HP15_2874at 3011.594 kb on - strand, within HP15_2874at 3011.699 kb on - strand, within HP15_2874at 3011.706 kb on + strand, within HP15_2874at 3011.940 kb on - strand, within HP15_2875at 3011.962 kb on - strand, within HP15_2875at 3012.018 kb on - strand, within HP15_2875at 3012.018 kb on - strand, within HP15_2875at 3012.023 kb on - strand, within HP15_2875at 3012.068 kb on + strand, within HP15_2875at 3012.207 kb on + strandat 3012.212 kb on + strandat 3012.212 kb on + strandat 3012.212 kb on + strandat 3012.212 kb on + strandat 3012.217 kb on + strandat 3012.222 kb on + strandat 3012.230 kb on - strandat 3012.285 kb on + strand, within HP15_2876at 3012.388 kb on + strand, within HP15_2876at 3012.401 kb on + strand, within HP15_2876at 3012.417 kb on + strand, within HP15_2876at 3012.433 kb on + strand, within HP15_2876at 3012.618 kb on + strand, within HP15_2876at 3012.636 kb on - strand, within HP15_2876at 3012.694 kb on - strand, within HP15_2876at 3012.722 kb on + strand, within HP15_2876at 3012.736 kb on + strand, within HP15_2876at 3012.744 kb on - strand, within HP15_2876at 3012.773 kb on + strand, within HP15_2876at 3012.785 kb on - strand, within HP15_2876at 3012.812 kb on + strand, within HP15_2876

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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3,010,533 + HP15_2873 0.43 -1.1
3,010,536 - HP15_2873 0.43 +0.2
3,010,559 + HP15_2873 0.45 +0.3
3,010,579 + HP15_2873 0.46 +1.9
3,010,589 + HP15_2873 0.47 +0.3
3,010,589 + HP15_2873 0.47 -0.3
3,010,589 + HP15_2873 0.47 -0.9
3,010,589 + HP15_2873 0.47 +0.2
3,010,589 + HP15_2873 0.47 +0.9
3,010,589 + HP15_2873 0.47 +0.0
3,010,589 + HP15_2873 0.47 +0.5
3,010,589 + HP15_2873 0.47 +0.7
3,010,589 + HP15_2873 0.47 +0.7
3,010,589 + HP15_2873 0.47 +0.6
3,010,592 - HP15_2873 0.47 +0.4
3,010,597 - HP15_2873 0.47 +0.3
3,010,597 - HP15_2873 0.47 +0.1
3,010,597 - HP15_2873 0.47 -0.9
3,010,597 - HP15_2873 0.47 -1.6
3,010,597 - HP15_2873 0.47 +0.5
3,010,599 + HP15_2873 0.47 -0.6
3,010,633 - HP15_2873 0.49 -0.9
3,010,810 + HP15_2873 0.60 +0.3
3,010,892 - HP15_2873 0.64 +0.3
3,010,892 - HP15_2873 0.64 -0.5
3,010,892 - HP15_2873 0.64 +0.1
3,010,915 - HP15_2873 0.66 +0.5
3,011,011 + HP15_2873 0.71 -0.5
3,011,067 - HP15_2873 0.75 +0.7
3,011,069 + HP15_2873 0.75 -0.1
3,011,159 - HP15_2873 0.80 -0.3
3,011,278 + HP15_2873 0.87 +0.5
3,011,310 - HP15_2873 0.89 -0.6
3,011,336 - -0.1
3,011,342 - +0.1
3,011,421 + -0.1
3,011,422 - -0.5
3,011,474 + +0.5
3,011,515 - -0.1
3,011,567 + HP15_2874 0.22 -1.9
3,011,573 + HP15_2874 0.24 -0.9
3,011,586 + HP15_2874 0.28 -1.3
3,011,594 - HP15_2874 0.31 -0.0
3,011,699 - HP15_2874 0.64 -1.4
3,011,706 + HP15_2874 0.66 -0.2
3,011,940 - HP15_2875 0.38 -0.1
3,011,962 - HP15_2875 0.46 -0.8
3,012,018 - HP15_2875 0.64 -0.3
3,012,018 - HP15_2875 0.64 +0.5
3,012,023 - HP15_2875 0.66 +0.0
3,012,068 + HP15_2875 0.81 +0.1
3,012,207 + -0.0
3,012,212 + -0.1
3,012,212 + +0.2
3,012,212 + -0.1
3,012,212 + -0.9
3,012,217 + +0.2
3,012,222 + +0.6
3,012,230 - +0.1
3,012,285 + HP15_2876 0.13 -0.3
3,012,388 + HP15_2876 0.25 -0.5
3,012,401 + HP15_2876 0.26 +0.5
3,012,417 + HP15_2876 0.28 +0.5
3,012,433 + HP15_2876 0.30 -1.0
3,012,618 + HP15_2876 0.50 +0.3
3,012,636 - HP15_2876 0.52 +0.1
3,012,694 - HP15_2876 0.59 +0.5
3,012,722 + HP15_2876 0.62 +0.0
3,012,736 + HP15_2876 0.63 +0.6
3,012,744 - HP15_2876 0.64 +0.7
3,012,773 + HP15_2876 0.67 +0.5
3,012,785 - HP15_2876 0.69 -0.0
3,012,812 + HP15_2876 0.72 +2.3

Or see this region's nucleotide sequence