Strain Fitness in Marinobacter adhaerens HP15 around HP15_2837

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2835 and HP15_2836 are separated by 91 nucleotidesHP15_2836 and HP15_2837 are separated by 238 nucleotidesHP15_2837 and HP15_2838 are separated by 228 nucleotides HP15_2835: HP15_2835 - cold shock, CspA, at 2,978,454 to 2,978,660 _2835 HP15_2836: HP15_2836 - conserved hypothetical protein, membrane, at 2,978,752 to 2,979,126 _2836 HP15_2837: HP15_2837 - conserved hypothetical protein, at 2,979,365 to 2,979,586 _2837 HP15_2838: HP15_2838 - oxidoreductase, short chain dehydrogenase/reductase family-like protein, at 2,979,815 to 2,980,588 _2838 Position (kb) 2979 2980Strain fitness (log2 ratio) -1 0 1at 2978.525 kb on - strand, within HP15_2835at 2978.525 kb on - strand, within HP15_2835at 2978.555 kb on + strand, within HP15_2835at 2978.597 kb on - strand, within HP15_2835at 2978.665 kb on - strandat 2978.691 kb on + strandat 2978.699 kb on - strandat 2978.700 kb on - strandat 2978.700 kb on - strandat 2978.758 kb on - strandat 2978.758 kb on - strandat 2978.859 kb on + strand, within HP15_2836at 2978.867 kb on - strand, within HP15_2836at 2978.883 kb on - strand, within HP15_2836at 2978.962 kb on + strand, within HP15_2836at 2978.994 kb on - strand, within HP15_2836at 2979.211 kb on - strandat 2979.278 kb on + strandat 2979.313 kb on - strandat 2979.366 kb on - strandat 2979.470 kb on + strand, within HP15_2837at 2979.515 kb on + strand, within HP15_2837at 2979.523 kb on - strand, within HP15_2837at 2979.671 kb on + strandat 2979.671 kb on + strandat 2979.683 kb on + strandat 2979.702 kb on - strandat 2979.704 kb on + strandat 2979.830 kb on - strandat 2979.945 kb on - strand, within HP15_2838at 2980.237 kb on + strand, within HP15_2838at 2980.249 kb on + strand, within HP15_2838at 2980.331 kb on + strand, within HP15_2838at 2980.346 kb on - strand, within HP15_2838at 2980.388 kb on - strand, within HP15_2838at 2980.507 kb on + strand, within HP15_2838at 2980.527 kb on + strandat 2980.538 kb on + strandat 2980.546 kb on - strandat 2980.577 kb on + strandat 2980.582 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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2,978,525 - HP15_2835 0.34 +0.2
2,978,525 - HP15_2835 0.34 -0.6
2,978,555 + HP15_2835 0.49 -0.2
2,978,597 - HP15_2835 0.69 +0.1
2,978,665 - -0.2
2,978,691 + -0.6
2,978,699 - -0.5
2,978,700 - +0.1
2,978,700 - +0.3
2,978,758 - +0.9
2,978,758 - +0.6
2,978,859 + HP15_2836 0.29 +0.4
2,978,867 - HP15_2836 0.31 -0.7
2,978,883 - HP15_2836 0.35 -0.3
2,978,962 + HP15_2836 0.56 -0.5
2,978,994 - HP15_2836 0.65 -0.1
2,979,211 - +0.5
2,979,278 + -0.3
2,979,313 - -0.5
2,979,366 - +0.0
2,979,470 + HP15_2837 0.47 +0.0
2,979,515 + HP15_2837 0.68 -0.9
2,979,523 - HP15_2837 0.71 -0.2
2,979,671 + +1.1
2,979,671 + -0.3
2,979,683 + -0.1
2,979,702 - -0.1
2,979,704 + -0.1
2,979,830 - +1.0
2,979,945 - HP15_2838 0.17 +0.5
2,980,237 + HP15_2838 0.55 +0.3
2,980,249 + HP15_2838 0.56 -0.8
2,980,331 + HP15_2838 0.67 +0.4
2,980,346 - HP15_2838 0.69 +0.0
2,980,388 - HP15_2838 0.74 -0.2
2,980,507 + HP15_2838 0.89 +0.4
2,980,527 + -0.3
2,980,538 + +0.2
2,980,546 - -0.0
2,980,577 + -0.8
2,980,582 + -1.2

Or see this region's nucleotide sequence