Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2820 and HP15_2821 are separated by 37 nucleotides HP15_2821 and HP15_2822 are separated by 113 nucleotides HP15_2822 and HP15_2823 overlap by 11 nucleotides HP15_2823 and HP15_2824 overlap by 18 nucleotides HP15_2824 and HP15_2825 are separated by 8 nucleotides HP15_2825 and HP15_2826 are separated by 314 nucleotides
HP15_2820: HP15_2820 - phosphate: Na+ symporter, at 2,965,606 to 2,967,414
_2820
HP15_2821: HP15_2821 - hypothetical protein, at 2,967,452 to 2,967,700
_2821
HP15_2822: HP15_2822 - MutT/nudix family protein, at 2,967,814 to 2,968,296
_2822
HP15_2823: HP15_2823 - Zn-dependent hydrolase of the beta-lactamase fold, at 2,968,286 to 2,969,311
_2823
HP15_2824: HP15_2824 - conserved hypothetical protein, membrane, at 2,969,294 to 2,969,779
_2824
HP15_2825: HP15_2825 - conserved hypothetical protein, at 2,969,788 to 2,969,991
_2825
HP15_2826: HP15_2826 - conserved hypothetical protein, at 2,970,306 to 2,971,220
_2826
Position (kb)
2968
2969
2970 Strain fitness (log2 ratio)
-1
0
1 at 2967.330 kb on + strand at 2967.338 kb on - strand at 2967.370 kb on - strand at 2967.375 kb on - strand at 2967.402 kb on + strand at 2967.402 kb on + strand at 2967.418 kb on + strand at 2967.429 kb on + strand at 2967.657 kb on - strand, within HP15_2821 at 2967.673 kb on + strand, within HP15_2821 at 2967.685 kb on + strand at 2967.693 kb on - strand at 2967.693 kb on - strand at 2967.693 kb on - strand at 2967.773 kb on - strand at 2967.845 kb on - strand at 2967.857 kb on - strand at 2968.037 kb on + strand, within HP15_2822 at 2968.045 kb on - strand, within HP15_2822 at 2968.045 kb on - strand, within HP15_2822 at 2968.061 kb on + strand, within HP15_2822 at 2968.091 kb on - strand, within HP15_2822 at 2968.165 kb on + strand, within HP15_2822 at 2968.165 kb on + strand, within HP15_2822 at 2968.165 kb on + strand, within HP15_2822 at 2968.165 kb on + strand, within HP15_2822 at 2968.173 kb on - strand, within HP15_2822 at 2968.173 kb on - strand, within HP15_2822 at 2968.173 kb on - strand, within HP15_2822 at 2968.173 kb on - strand, within HP15_2822 at 2968.501 kb on + strand, within HP15_2823 at 2968.504 kb on - strand, within HP15_2823 at 2968.509 kb on - strand, within HP15_2823 at 2968.511 kb on + strand, within HP15_2823 at 2968.595 kb on - strand, within HP15_2823 at 2968.609 kb on + strand, within HP15_2823 at 2968.610 kb on - strand, within HP15_2823 at 2968.791 kb on + strand, within HP15_2823 at 2968.791 kb on + strand, within HP15_2823 at 2968.822 kb on + strand, within HP15_2823 at 2968.842 kb on + strand, within HP15_2823 at 2968.850 kb on + strand, within HP15_2823 at 2968.865 kb on + strand, within HP15_2823 at 2968.918 kb on - strand, within HP15_2823 at 2969.005 kb on + strand, within HP15_2823 at 2969.050 kb on - strand, within HP15_2823 at 2969.118 kb on - strand, within HP15_2823 at 2969.143 kb on - strand, within HP15_2823 at 2969.148 kb on - strand, within HP15_2823 at 2969.151 kb on + strand, within HP15_2823 at 2969.199 kb on + strand, within HP15_2823 at 2969.254 kb on - strand at 2969.259 kb on - strand at 2969.333 kb on + strand at 2969.341 kb on - strand at 2969.359 kb on + strand, within HP15_2824 at 2969.359 kb on + strand, within HP15_2824 at 2969.364 kb on + strand, within HP15_2824 at 2969.372 kb on + strand, within HP15_2824 at 2969.380 kb on - strand, within HP15_2824 at 2969.515 kb on - strand, within HP15_2824 at 2969.680 kb on + strand, within HP15_2824 at 2969.691 kb on + strand, within HP15_2824 at 2969.699 kb on - strand, within HP15_2824 at 2969.728 kb on + strand, within HP15_2824 at 2969.731 kb on - strand at 2969.813 kb on + strand, within HP15_2825 at 2969.846 kb on + strand, within HP15_2825 at 2969.854 kb on - strand, within HP15_2825 at 2969.931 kb on + strand, within HP15_2825 at 2969.948 kb on + strand, within HP15_2825 at 2970.024 kb on + strand at 2970.090 kb on - strand at 2970.104 kb on - strand at 2970.112 kb on + strand at 2970.112 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 2,967,330 + -0.4 2,967,338 - -0.3 2,967,370 - +0.0 2,967,375 - -0.8 2,967,402 + -0.5 2,967,402 + +0.1 2,967,418 + +0.3 2,967,429 + +0.2 2,967,657 - HP15_2821 0.82 -0.1 2,967,673 + HP15_2821 0.89 +0.3 2,967,685 + -0.3 2,967,693 - +0.3 2,967,693 - +0.3 2,967,693 - +0.6 2,967,773 - +0.4 2,967,845 - +0.3 2,967,857 - -0.0 2,968,037 + HP15_2822 0.46 +0.7 2,968,045 - HP15_2822 0.48 -0.3 2,968,045 - HP15_2822 0.48 +0.7 2,968,061 + HP15_2822 0.51 -0.9 2,968,091 - HP15_2822 0.57 -0.2 2,968,165 + HP15_2822 0.73 +0.3 2,968,165 + HP15_2822 0.73 -0.1 2,968,165 + HP15_2822 0.73 -0.7 2,968,165 + HP15_2822 0.73 +0.4 2,968,173 - HP15_2822 0.74 +0.3 2,968,173 - HP15_2822 0.74 +0.5 2,968,173 - HP15_2822 0.74 +0.0 2,968,173 - HP15_2822 0.74 -0.1 2,968,501 + HP15_2823 0.21 +0.8 2,968,504 - HP15_2823 0.21 +0.3 2,968,509 - HP15_2823 0.22 +0.2 2,968,511 + HP15_2823 0.22 +0.3 2,968,595 - HP15_2823 0.30 +0.7 2,968,609 + HP15_2823 0.31 -0.1 2,968,610 - HP15_2823 0.32 +0.4 2,968,791 + HP15_2823 0.49 +0.3 2,968,791 + HP15_2823 0.49 -0.0 2,968,822 + HP15_2823 0.52 +0.4 2,968,842 + HP15_2823 0.54 +0.8 2,968,850 + HP15_2823 0.55 +0.3 2,968,865 + HP15_2823 0.56 +0.3 2,968,918 - HP15_2823 0.62 -0.1 2,969,005 + HP15_2823 0.70 +0.3 2,969,050 - HP15_2823 0.74 +1.2 2,969,118 - HP15_2823 0.81 +0.4 2,969,143 - HP15_2823 0.84 +0.4 2,969,148 - HP15_2823 0.84 +0.4 2,969,151 + HP15_2823 0.84 +1.2 2,969,199 + HP15_2823 0.89 -0.2 2,969,254 - -0.1 2,969,259 - +0.4 2,969,333 + -0.5 2,969,341 - +0.6 2,969,359 + HP15_2824 0.13 -0.4 2,969,359 + HP15_2824 0.13 -0.6 2,969,364 + HP15_2824 0.14 -0.0 2,969,372 + HP15_2824 0.16 -1.1 2,969,380 - HP15_2824 0.18 -0.1 2,969,515 - HP15_2824 0.45 -0.9 2,969,680 + HP15_2824 0.79 -0.2 2,969,691 + HP15_2824 0.82 +0.6 2,969,699 - HP15_2824 0.83 +0.8 2,969,728 + HP15_2824 0.89 -0.2 2,969,731 - -0.7 2,969,813 + HP15_2825 0.12 -0.3 2,969,846 + HP15_2825 0.28 +0.3 2,969,854 - HP15_2825 0.32 +0.7 2,969,931 + HP15_2825 0.70 -0.6 2,969,948 + HP15_2825 0.78 +0.0 2,970,024 + -1.7 2,970,090 - -0.2 2,970,104 - +1.2 2,970,112 + +0.2 2,970,112 + -0.5
Or see this region's nucleotide sequence