Strain Fitness in Marinobacter adhaerens HP15 around HP15_2823

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2820 and HP15_2821 are separated by 37 nucleotidesHP15_2821 and HP15_2822 are separated by 113 nucleotidesHP15_2822 and HP15_2823 overlap by 11 nucleotidesHP15_2823 and HP15_2824 overlap by 18 nucleotidesHP15_2824 and HP15_2825 are separated by 8 nucleotidesHP15_2825 and HP15_2826 are separated by 314 nucleotides HP15_2820: HP15_2820 - phosphate: Na+ symporter, at 2,965,606 to 2,967,414 _2820 HP15_2821: HP15_2821 - hypothetical protein, at 2,967,452 to 2,967,700 _2821 HP15_2822: HP15_2822 - MutT/nudix family protein, at 2,967,814 to 2,968,296 _2822 HP15_2823: HP15_2823 - Zn-dependent hydrolase of the beta-lactamase fold, at 2,968,286 to 2,969,311 _2823 HP15_2824: HP15_2824 - conserved hypothetical protein, membrane, at 2,969,294 to 2,969,779 _2824 HP15_2825: HP15_2825 - conserved hypothetical protein, at 2,969,788 to 2,969,991 _2825 HP15_2826: HP15_2826 - conserved hypothetical protein, at 2,970,306 to 2,971,220 _2826 Position (kb) 2968 2969 2970Strain fitness (log2 ratio) -1 0 1at 2967.330 kb on + strandat 2967.338 kb on - strandat 2967.370 kb on - strandat 2967.375 kb on - strandat 2967.402 kb on + strandat 2967.402 kb on + strandat 2967.418 kb on + strandat 2967.429 kb on + strandat 2967.657 kb on - strand, within HP15_2821at 2967.673 kb on + strand, within HP15_2821at 2967.685 kb on + strandat 2967.693 kb on - strandat 2967.693 kb on - strandat 2967.693 kb on - strandat 2967.773 kb on - strandat 2967.845 kb on - strandat 2967.857 kb on - strandat 2968.037 kb on + strand, within HP15_2822at 2968.045 kb on - strand, within HP15_2822at 2968.045 kb on - strand, within HP15_2822at 2968.061 kb on + strand, within HP15_2822at 2968.091 kb on - strand, within HP15_2822at 2968.165 kb on + strand, within HP15_2822at 2968.165 kb on + strand, within HP15_2822at 2968.165 kb on + strand, within HP15_2822at 2968.165 kb on + strand, within HP15_2822at 2968.173 kb on - strand, within HP15_2822at 2968.173 kb on - strand, within HP15_2822at 2968.173 kb on - strand, within HP15_2822at 2968.173 kb on - strand, within HP15_2822at 2968.501 kb on + strand, within HP15_2823at 2968.504 kb on - strand, within HP15_2823at 2968.509 kb on - strand, within HP15_2823at 2968.511 kb on + strand, within HP15_2823at 2968.595 kb on - strand, within HP15_2823at 2968.609 kb on + strand, within HP15_2823at 2968.610 kb on - strand, within HP15_2823at 2968.791 kb on + strand, within HP15_2823at 2968.791 kb on + strand, within HP15_2823at 2968.822 kb on + strand, within HP15_2823at 2968.842 kb on + strand, within HP15_2823at 2968.850 kb on + strand, within HP15_2823at 2968.865 kb on + strand, within HP15_2823at 2968.918 kb on - strand, within HP15_2823at 2969.005 kb on + strand, within HP15_2823at 2969.050 kb on - strand, within HP15_2823at 2969.118 kb on - strand, within HP15_2823at 2969.143 kb on - strand, within HP15_2823at 2969.148 kb on - strand, within HP15_2823at 2969.151 kb on + strand, within HP15_2823at 2969.199 kb on + strand, within HP15_2823at 2969.254 kb on - strandat 2969.259 kb on - strandat 2969.333 kb on + strandat 2969.341 kb on - strandat 2969.359 kb on + strand, within HP15_2824at 2969.359 kb on + strand, within HP15_2824at 2969.364 kb on + strand, within HP15_2824at 2969.372 kb on + strand, within HP15_2824at 2969.380 kb on - strand, within HP15_2824at 2969.515 kb on - strand, within HP15_2824at 2969.680 kb on + strand, within HP15_2824at 2969.691 kb on + strand, within HP15_2824at 2969.699 kb on - strand, within HP15_2824at 2969.728 kb on + strand, within HP15_2824at 2969.731 kb on - strandat 2969.813 kb on + strand, within HP15_2825at 2969.846 kb on + strand, within HP15_2825at 2969.854 kb on - strand, within HP15_2825at 2969.931 kb on + strand, within HP15_2825at 2969.948 kb on + strand, within HP15_2825at 2970.024 kb on + strandat 2970.090 kb on - strandat 2970.104 kb on - strandat 2970.112 kb on + strandat 2970.112 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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2,967,330 + -0.4
2,967,338 - -0.3
2,967,370 - +0.0
2,967,375 - -0.8
2,967,402 + -0.5
2,967,402 + +0.1
2,967,418 + +0.3
2,967,429 + +0.2
2,967,657 - HP15_2821 0.82 -0.1
2,967,673 + HP15_2821 0.89 +0.3
2,967,685 + -0.3
2,967,693 - +0.3
2,967,693 - +0.3
2,967,693 - +0.6
2,967,773 - +0.4
2,967,845 - +0.3
2,967,857 - -0.0
2,968,037 + HP15_2822 0.46 +0.7
2,968,045 - HP15_2822 0.48 -0.3
2,968,045 - HP15_2822 0.48 +0.7
2,968,061 + HP15_2822 0.51 -0.9
2,968,091 - HP15_2822 0.57 -0.2
2,968,165 + HP15_2822 0.73 +0.3
2,968,165 + HP15_2822 0.73 -0.1
2,968,165 + HP15_2822 0.73 -0.7
2,968,165 + HP15_2822 0.73 +0.4
2,968,173 - HP15_2822 0.74 +0.3
2,968,173 - HP15_2822 0.74 +0.5
2,968,173 - HP15_2822 0.74 +0.0
2,968,173 - HP15_2822 0.74 -0.1
2,968,501 + HP15_2823 0.21 +0.8
2,968,504 - HP15_2823 0.21 +0.3
2,968,509 - HP15_2823 0.22 +0.2
2,968,511 + HP15_2823 0.22 +0.3
2,968,595 - HP15_2823 0.30 +0.7
2,968,609 + HP15_2823 0.31 -0.1
2,968,610 - HP15_2823 0.32 +0.4
2,968,791 + HP15_2823 0.49 +0.3
2,968,791 + HP15_2823 0.49 -0.0
2,968,822 + HP15_2823 0.52 +0.4
2,968,842 + HP15_2823 0.54 +0.8
2,968,850 + HP15_2823 0.55 +0.3
2,968,865 + HP15_2823 0.56 +0.3
2,968,918 - HP15_2823 0.62 -0.1
2,969,005 + HP15_2823 0.70 +0.3
2,969,050 - HP15_2823 0.74 +1.2
2,969,118 - HP15_2823 0.81 +0.4
2,969,143 - HP15_2823 0.84 +0.4
2,969,148 - HP15_2823 0.84 +0.4
2,969,151 + HP15_2823 0.84 +1.2
2,969,199 + HP15_2823 0.89 -0.2
2,969,254 - -0.1
2,969,259 - +0.4
2,969,333 + -0.5
2,969,341 - +0.6
2,969,359 + HP15_2824 0.13 -0.4
2,969,359 + HP15_2824 0.13 -0.6
2,969,364 + HP15_2824 0.14 -0.0
2,969,372 + HP15_2824 0.16 -1.1
2,969,380 - HP15_2824 0.18 -0.1
2,969,515 - HP15_2824 0.45 -0.9
2,969,680 + HP15_2824 0.79 -0.2
2,969,691 + HP15_2824 0.82 +0.6
2,969,699 - HP15_2824 0.83 +0.8
2,969,728 + HP15_2824 0.89 -0.2
2,969,731 - -0.7
2,969,813 + HP15_2825 0.12 -0.3
2,969,846 + HP15_2825 0.28 +0.3
2,969,854 - HP15_2825 0.32 +0.7
2,969,931 + HP15_2825 0.70 -0.6
2,969,948 + HP15_2825 0.78 +0.0
2,970,024 + -1.7
2,970,090 - -0.2
2,970,104 - +1.2
2,970,112 + +0.2
2,970,112 + -0.5

Or see this region's nucleotide sequence