Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2689 and HP15_2690 are separated by 266 nucleotides HP15_2690 and HP15_2691 are separated by 32 nucleotides
HP15_2689: HP15_2689 - NAD-specific glutamate dehydrogenase, at 2,839,200 to 2,842,586
_2689
HP15_2690: HP15_2690 - transcriptional regulator, AsnC family, at 2,842,853 to 2,843,305
_2690
HP15_2691: HP15_2691 - carbonic anhydrase/acetyltransferase, isoleucine patch superfamily, at 2,843,338 to 2,844,060
_2691
Position (kb)
2842
2843
2844 Strain fitness (log2 ratio)
-2
-1
0
1 at 2841.893 kb on + strand, within HP15_2689 at 2841.901 kb on - strand, within HP15_2689 at 2841.904 kb on + strand, within HP15_2689 at 2842.052 kb on + strand, within HP15_2689 at 2842.231 kb on - strand, within HP15_2689 at 2842.252 kb on + strand at 2842.440 kb on - strand at 2842.440 kb on - strand at 2842.442 kb on + strand at 2842.529 kb on + strand at 2842.530 kb on - strand at 2842.598 kb on + strand at 2842.598 kb on + strand at 2842.730 kb on - strand at 2842.895 kb on + strand at 2842.940 kb on - strand, within HP15_2690 at 2842.988 kb on - strand, within HP15_2690 at 2842.988 kb on - strand, within HP15_2690 at 2842.988 kb on - strand, within HP15_2690 at 2843.107 kb on + strand, within HP15_2690 at 2843.252 kb on + strand, within HP15_2690 at 2843.284 kb on + strand at 2843.386 kb on + strand at 2843.410 kb on - strand at 2843.468 kb on + strand, within HP15_2691 at 2843.558 kb on + strand, within HP15_2691 at 2843.561 kb on - strand, within HP15_2691 at 2843.566 kb on - strand, within HP15_2691 at 2843.690 kb on - strand, within HP15_2691 at 2843.753 kb on + strand, within HP15_2691 at 2843.758 kb on + strand, within HP15_2691 at 2843.885 kb on + strand, within HP15_2691 at 2843.915 kb on - strand, within HP15_2691 at 2843.947 kb on - strand, within HP15_2691 at 2843.972 kb on + strand, within HP15_2691 at 2844.152 kb on + strand at 2844.305 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 2,841,893 + HP15_2689 0.80 -0.2 2,841,901 - HP15_2689 0.80 -0.7 2,841,904 + HP15_2689 0.80 -1.3 2,842,052 + HP15_2689 0.84 +1.1 2,842,231 - HP15_2689 0.89 -0.6 2,842,252 + +0.7 2,842,440 - +0.9 2,842,440 - +0.2 2,842,442 + -0.4 2,842,529 + -0.3 2,842,530 - -0.2 2,842,598 + -0.6 2,842,598 + +0.2 2,842,730 - +0.1 2,842,895 + -1.3 2,842,940 - HP15_2690 0.19 -0.8 2,842,988 - HP15_2690 0.30 -1.3 2,842,988 - HP15_2690 0.30 -0.7 2,842,988 - HP15_2690 0.30 -2.1 2,843,107 + HP15_2690 0.56 -0.0 2,843,252 + HP15_2690 0.88 -1.0 2,843,284 + -0.3 2,843,386 + -0.9 2,843,410 - +0.3 2,843,468 + HP15_2691 0.18 -0.1 2,843,558 + HP15_2691 0.30 +0.2 2,843,561 - HP15_2691 0.31 -0.1 2,843,566 - HP15_2691 0.32 -0.0 2,843,690 - HP15_2691 0.49 +0.2 2,843,753 + HP15_2691 0.57 +0.3 2,843,758 + HP15_2691 0.58 +0.3 2,843,885 + HP15_2691 0.76 -1.3 2,843,915 - HP15_2691 0.80 -0.2 2,843,947 - HP15_2691 0.84 +0.1 2,843,972 + HP15_2691 0.88 +0.3 2,844,152 + +0.4 2,844,305 + -0.6
Or see this region's nucleotide sequence