Strain Fitness in Marinobacter adhaerens HP15 around HP15_2685

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2684 and HP15_2685 are separated by 31 nucleotidesHP15_2685 and HP15_2686 overlap by 4 nucleotidesHP15_2686 and HP15_2687 overlap by 11 nucleotides HP15_2684: HP15_2684 - TRAP-type C4-dicarboxylate transport system, large permease component, at 2,831,671 to 2,832,978 _2684 HP15_2685: HP15_2685 - UPF0271 protein, LamB/YcsF family, at 2,833,010 to 2,833,744 _2685 HP15_2686: HP15_2686 - allophanate hydrolase subunit 1, at 2,833,741 to 2,834,433 _2686 HP15_2687: HP15_2687 - urea amidolyase related protein, at 2,834,423 to 2,835,361 _2687 Position (kb) 2833 2834Strain fitness (log2 ratio) -2 -1 0 1at 2832.080 kb on - strand, within HP15_2684at 2832.080 kb on - strand, within HP15_2684at 2832.080 kb on - strand, within HP15_2684at 2832.119 kb on + strand, within HP15_2684at 2832.127 kb on - strand, within HP15_2684at 2832.200 kb on - strand, within HP15_2684at 2832.216 kb on - strand, within HP15_2684at 2832.258 kb on - strand, within HP15_2684at 2832.324 kb on + strand, within HP15_2684at 2832.327 kb on - strand, within HP15_2684at 2832.385 kb on + strand, within HP15_2684at 2832.388 kb on - strand, within HP15_2684at 2832.416 kb on + strand, within HP15_2684at 2832.481 kb on - strand, within HP15_2684at 2832.516 kb on - strand, within HP15_2684at 2832.564 kb on + strand, within HP15_2684at 2832.682 kb on - strand, within HP15_2684at 2832.711 kb on - strand, within HP15_2684at 2832.791 kb on + strand, within HP15_2684at 2832.809 kb on - strand, within HP15_2684at 2832.826 kb on - strand, within HP15_2684at 2832.858 kb on - strandat 2833.008 kb on - strandat 2833.141 kb on - strand, within HP15_2685at 2833.197 kb on + strand, within HP15_2685at 2833.205 kb on - strand, within HP15_2685at 2833.249 kb on + strand, within HP15_2685at 2833.489 kb on + strand, within HP15_2685at 2833.584 kb on + strand, within HP15_2685at 2833.652 kb on - strand, within HP15_2685at 2833.889 kb on + strand, within HP15_2686at 2833.889 kb on + strand, within HP15_2686at 2833.894 kb on + strand, within HP15_2686at 2833.940 kb on + strand, within HP15_2686at 2834.049 kb on - strand, within HP15_2686at 2834.124 kb on + strand, within HP15_2686at 2834.176 kb on - strand, within HP15_2686at 2834.355 kb on + strand, within HP15_2686at 2834.526 kb on + strand, within HP15_2687at 2834.601 kb on + strand, within HP15_2687at 2834.713 kb on + strand, within HP15_2687

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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2,832,080 - HP15_2684 0.31 -0.1
2,832,080 - HP15_2684 0.31 +0.1
2,832,080 - HP15_2684 0.31 -1.3
2,832,119 + HP15_2684 0.34 +0.0
2,832,127 - HP15_2684 0.35 -1.6
2,832,200 - HP15_2684 0.40 +0.9
2,832,216 - HP15_2684 0.42 -0.9
2,832,258 - HP15_2684 0.45 -0.3
2,832,324 + HP15_2684 0.50 -1.9
2,832,327 - HP15_2684 0.50 -0.0
2,832,385 + HP15_2684 0.55 -0.1
2,832,388 - HP15_2684 0.55 -0.9
2,832,416 + HP15_2684 0.57 +0.7
2,832,481 - HP15_2684 0.62 +1.3
2,832,516 - HP15_2684 0.65 +1.7
2,832,564 + HP15_2684 0.68 -0.1
2,832,682 - HP15_2684 0.77 -1.3
2,832,711 - HP15_2684 0.80 -1.1
2,832,791 + HP15_2684 0.86 +0.8
2,832,809 - HP15_2684 0.87 -0.3
2,832,826 - HP15_2684 0.88 -0.5
2,832,858 - -0.3
2,833,008 - +0.7
2,833,141 - HP15_2685 0.18 -0.0
2,833,197 + HP15_2685 0.25 -0.3
2,833,205 - HP15_2685 0.27 -0.8
2,833,249 + HP15_2685 0.33 -0.9
2,833,489 + HP15_2685 0.65 -0.5
2,833,584 + HP15_2685 0.78 -0.8
2,833,652 - HP15_2685 0.87 -1.5
2,833,889 + HP15_2686 0.21 -0.3
2,833,889 + HP15_2686 0.21 -2.1
2,833,894 + HP15_2686 0.22 -0.3
2,833,940 + HP15_2686 0.29 +0.1
2,834,049 - HP15_2686 0.44 -1.3
2,834,124 + HP15_2686 0.55 +1.3
2,834,176 - HP15_2686 0.63 -0.5
2,834,355 + HP15_2686 0.89 -0.3
2,834,526 + HP15_2687 0.11 -0.6
2,834,601 + HP15_2687 0.19 -0.7
2,834,713 + HP15_2687 0.31 -2.0

Or see this region's nucleotide sequence