Strain Fitness in Marinobacter adhaerens HP15 around HP15_2611

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2610 and HP15_2611 are separated by 113 nucleotidesHP15_2611 and HP15_2612 are separated by 166 nucleotidesHP15_2612 and HP15_2613 are separated by 78 nucleotides HP15_2610: HP15_2610 - D-amino acid dehydrogenase small subunit, at 2,762,711 to 2,763,994 _2610 HP15_2611: HP15_2611 - translation initiation factor SUI1, at 2,764,108 to 2,764,332 _2611 HP15_2612: HP15_2612 - lipoprotein, at 2,764,499 to 2,765,029 _2612 HP15_2613: HP15_2613 - protein belonging to uncharacterized protein family UPF0029, at 2,765,108 to 2,765,713 _2613 Position (kb) 2764 2765Strain fitness (log2 ratio) -1 0 1at 2763.128 kb on + strand, within HP15_2610at 2763.136 kb on - strand, within HP15_2610at 2763.188 kb on - strand, within HP15_2610at 2763.330 kb on + strand, within HP15_2610at 2763.347 kb on + strand, within HP15_2610at 2763.355 kb on - strand, within HP15_2610at 2763.359 kb on + strand, within HP15_2610at 2763.389 kb on + strand, within HP15_2610at 2763.389 kb on + strand, within HP15_2610at 2763.390 kb on - strand, within HP15_2610at 2763.508 kb on + strand, within HP15_2610at 2763.540 kb on + strand, within HP15_2610at 2763.548 kb on - strand, within HP15_2610at 2763.560 kb on - strand, within HP15_2610at 2763.572 kb on + strand, within HP15_2610at 2763.620 kb on + strand, within HP15_2610at 2763.668 kb on + strand, within HP15_2610at 2763.707 kb on + strand, within HP15_2610at 2763.753 kb on + strand, within HP15_2610at 2763.806 kb on - strand, within HP15_2610at 2763.877 kb on + strandat 2763.883 kb on + strandat 2764.290 kb on + strand, within HP15_2611at 2764.292 kb on + strand, within HP15_2611at 2764.306 kb on - strand, within HP15_2611at 2764.565 kb on + strand, within HP15_2612at 2764.573 kb on - strand, within HP15_2612at 2764.857 kb on - strand, within HP15_2612at 2764.867 kb on - strand, within HP15_2612at 2764.986 kb on + strandat 2764.994 kb on - strandat 2764.994 kb on - strandat 2765.067 kb on + strandat 2765.160 kb on + strandat 2765.232 kb on + strand, within HP15_2613

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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2,763,128 + HP15_2610 0.32 -0.9
2,763,136 - HP15_2610 0.33 +0.5
2,763,188 - HP15_2610 0.37 -0.9
2,763,330 + HP15_2610 0.48 +0.7
2,763,347 + HP15_2610 0.50 +0.5
2,763,355 - HP15_2610 0.50 +0.4
2,763,359 + HP15_2610 0.50 -0.3
2,763,389 + HP15_2610 0.53 -0.0
2,763,389 + HP15_2610 0.53 +0.5
2,763,390 - HP15_2610 0.53 -0.1
2,763,508 + HP15_2610 0.62 -0.9
2,763,540 + HP15_2610 0.65 +0.3
2,763,548 - HP15_2610 0.65 +0.2
2,763,560 - HP15_2610 0.66 +0.3
2,763,572 + HP15_2610 0.67 -0.7
2,763,620 + HP15_2610 0.71 -0.1
2,763,668 + HP15_2610 0.75 +0.7
2,763,707 + HP15_2610 0.78 -0.3
2,763,753 + HP15_2610 0.81 -0.2
2,763,806 - HP15_2610 0.85 +0.2
2,763,877 + +0.1
2,763,883 + +0.2
2,764,290 + HP15_2611 0.81 -0.8
2,764,292 + HP15_2611 0.82 -0.2
2,764,306 - HP15_2611 0.88 -0.6
2,764,565 + HP15_2612 0.12 +0.1
2,764,573 - HP15_2612 0.14 -0.4
2,764,857 - HP15_2612 0.67 +0.5
2,764,867 - HP15_2612 0.69 -0.8
2,764,986 + +0.3
2,764,994 - +0.0
2,764,994 - +0.9
2,765,067 + +0.9
2,765,160 + +0.3
2,765,232 + HP15_2613 0.20 -0.3

Or see this region's nucleotide sequence