Strain Fitness in Marinobacter adhaerens HP15 around HP15_2476

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2475 and HP15_2476 are separated by 102 nucleotidesHP15_2476 and HP15_2477 are separated by 244 nucleotidesHP15_2477 and HP15_2478 are separated by 89 nucleotides HP15_2475: HP15_2475 - DNA polymerase III, delta subunit, at 2,615,702 to 2,616,709 _2475 HP15_2476: HP15_2476 - conserved hypothetical protein, at 2,616,812 to 2,617,084 _2476 HP15_2477: HP15_2477 - endonuclease I, at 2,617,329 to 2,617,907 _2477 HP15_2478: HP15_2478 - Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data), at 2,617,997 to 2,619,757 _2478 Position (kb) 2616 2617 2618Strain fitness (log2 ratio) -2 -1 0 1at 2616.739 kb on + strandat 2616.756 kb on - strandat 2616.847 kb on - strand, within HP15_2476at 2616.904 kb on - strand, within HP15_2476at 2617.031 kb on - strand, within HP15_2476at 2617.087 kb on + strandat 2617.095 kb on - strandat 2617.299 kb on + strandat 2617.307 kb on - strandat 2617.326 kb on - strandat 2617.382 kb on + strandat 2617.390 kb on - strand, within HP15_2477at 2617.424 kb on + strand, within HP15_2477at 2617.500 kb on + strand, within HP15_2477at 2617.525 kb on + strand, within HP15_2477at 2617.578 kb on + strand, within HP15_2477at 2617.730 kb on + strand, within HP15_2477at 2617.747 kb on + strand, within HP15_2477at 2617.755 kb on - strand, within HP15_2477at 2617.788 kb on + strand, within HP15_2477at 2617.788 kb on + strand, within HP15_2477at 2617.798 kb on + strand, within HP15_2477at 2617.806 kb on - strand, within HP15_2477at 2617.806 kb on - strand, within HP15_2477at 2617.908 kb on - strandat 2618.013 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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2,616,739 + -0.2
2,616,756 - +0.7
2,616,847 - HP15_2476 0.13 -0.0
2,616,904 - HP15_2476 0.34 -1.4
2,617,031 - HP15_2476 0.80 -0.3
2,617,087 + +0.2
2,617,095 - -0.2
2,617,299 + -0.5
2,617,307 - -0.3
2,617,326 - -1.3
2,617,382 + -0.0
2,617,390 - HP15_2477 0.11 -0.2
2,617,424 + HP15_2477 0.16 -2.5
2,617,500 + HP15_2477 0.30 +0.7
2,617,525 + HP15_2477 0.34 +0.1
2,617,578 + HP15_2477 0.43 +0.1
2,617,730 + HP15_2477 0.69 +1.7
2,617,747 + HP15_2477 0.72 -0.3
2,617,755 - HP15_2477 0.74 +0.0
2,617,788 + HP15_2477 0.79 +0.1
2,617,788 + HP15_2477 0.79 -2.6
2,617,798 + HP15_2477 0.81 +0.3
2,617,806 - HP15_2477 0.82 +0.4
2,617,806 - HP15_2477 0.82 +0.4
2,617,908 - -0.9
2,618,013 - +0.9

Or see this region's nucleotide sequence