Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2467 and HP15_2468 are separated by 11 nucleotides HP15_2468 and HP15_2469 overlap by 23 nucleotides HP15_2469 and HP15_2470 overlap by 4 nucleotides HP15_2470 and HP15_2471 overlap by 11 nucleotides
HP15_2467: HP15_2467 - PhoH family protein, at 2,607,716 to 2,608,699
_2467
HP15_2468: HP15_2468 - metalloprotease YbeY, at 2,608,711 to 2,609,058
_2468
HP15_2469: HP15_2469 - predicted metal-dependent hydrolase, at 2,609,036 to 2,609,170
_2469
HP15_2470: HP15_2470 - metal ion transporter, at 2,609,167 to 2,610,012
_2470
HP15_2471: HP15_2471 - apolipoprotein N-acyltransferase, at 2,610,002 to 2,611,564
_2471
Position (kb)
2609
2610
2611 Strain fitness (log2 ratio)
-2
-1
0
1 at 2608.281 kb on + strand, within HP15_2467 at 2608.504 kb on - strand, within HP15_2467 at 2608.606 kb on + strand at 2608.606 kb on + strand at 2608.614 kb on - strand at 2609.119 kb on + strand, within HP15_2469 at 2609.156 kb on + strand, within HP15_2469 at 2609.449 kb on + strand, within HP15_2470 at 2609.685 kb on - strand, within HP15_2470 at 2609.706 kb on - strand, within HP15_2470 at 2609.726 kb on - strand, within HP15_2470
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 2,608,281 + HP15_2467 0.57 +0.5 2,608,504 - HP15_2467 0.80 -0.4 2,608,606 + +0.1 2,608,606 + -0.4 2,608,614 - -0.3 2,609,119 + HP15_2469 0.61 +0.3 2,609,156 + HP15_2469 0.89 -0.4 2,609,449 + HP15_2470 0.33 -1.9 2,609,685 - HP15_2470 0.61 -1.3 2,609,706 - HP15_2470 0.64 -1.6 2,609,726 - HP15_2470 0.66 -1.1
Or see this region's nucleotide sequence