Strain Fitness in Marinobacter adhaerens HP15 around HP15_2470

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2467 and HP15_2468 are separated by 11 nucleotidesHP15_2468 and HP15_2469 overlap by 23 nucleotidesHP15_2469 and HP15_2470 overlap by 4 nucleotidesHP15_2470 and HP15_2471 overlap by 11 nucleotides HP15_2467: HP15_2467 - PhoH family protein, at 2,607,716 to 2,608,699 _2467 HP15_2468: HP15_2468 - metalloprotease YbeY, at 2,608,711 to 2,609,058 _2468 HP15_2469: HP15_2469 - predicted metal-dependent hydrolase, at 2,609,036 to 2,609,170 _2469 HP15_2470: HP15_2470 - metal ion transporter, at 2,609,167 to 2,610,012 _2470 HP15_2471: HP15_2471 - apolipoprotein N-acyltransferase, at 2,610,002 to 2,611,564 _2471 Position (kb) 2609 2610 2611Strain fitness (log2 ratio) -2 -1 0 1at 2608.281 kb on + strand, within HP15_2467at 2608.504 kb on - strand, within HP15_2467at 2608.606 kb on + strandat 2608.606 kb on + strandat 2608.614 kb on - strandat 2609.119 kb on + strand, within HP15_2469at 2609.156 kb on + strand, within HP15_2469at 2609.449 kb on + strand, within HP15_2470at 2609.685 kb on - strand, within HP15_2470at 2609.706 kb on - strand, within HP15_2470at 2609.726 kb on - strand, within HP15_2470

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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2,608,281 + HP15_2467 0.57 +0.5
2,608,504 - HP15_2467 0.80 -0.4
2,608,606 + +0.1
2,608,606 + -0.4
2,608,614 - -0.3
2,609,119 + HP15_2469 0.61 +0.3
2,609,156 + HP15_2469 0.89 -0.4
2,609,449 + HP15_2470 0.33 -1.9
2,609,685 - HP15_2470 0.61 -1.3
2,609,706 - HP15_2470 0.64 -1.6
2,609,726 - HP15_2470 0.66 -1.1

Or see this region's nucleotide sequence