Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2427 and HP15_2428 are separated by 161 nucleotides HP15_2428 and HP15_2429 are separated by 53 nucleotides HP15_2429 and HP15_2430 are separated by 40 nucleotides
HP15_2427: HP15_2427 - histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) , at 2,568,197 to 2,569,249
_2427
HP15_2428: HP15_2428 - histidinol dehydrogenase, at 2,569,411 to 2,570,715
_2428
HP15_2429: HP15_2429 - ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) , at 2,570,769 to 2,571,410
_2429
HP15_2430: HP15_2430 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 2,571,451 to 2,572,713
_2430
Position (kb)
2569
2570
2571 Strain fitness (log2 ratio)
-2
-1
0
1 at 2568.508 kb on - strand, within HP15_2427 at 2568.559 kb on - strand, within HP15_2427 at 2568.559 kb on - strand, within HP15_2427 at 2568.756 kb on - strand, within HP15_2427 at 2569.057 kb on + strand, within HP15_2427 at 2569.077 kb on + strand, within HP15_2427 at 2569.277 kb on - strand at 2569.400 kb on - strand at 2569.408 kb on + strand at 2570.182 kb on + strand, within HP15_2428 at 2570.329 kb on + strand, within HP15_2428 at 2570.329 kb on + strand, within HP15_2428 at 2570.329 kb on + strand, within HP15_2428 at 2570.728 kb on + strand at 2570.773 kb on - strand at 2570.981 kb on + strand, within HP15_2429 at 2571.018 kb on + strand, within HP15_2429 at 2571.018 kb on + strand, within HP15_2429 at 2571.018 kb on + strand, within HP15_2429 at 2571.026 kb on - strand, within HP15_2429 at 2571.160 kb on - strand, within HP15_2429 at 2571.200 kb on + strand, within HP15_2429 at 2571.214 kb on + strand, within HP15_2429 at 2571.214 kb on - strand, within HP15_2429
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 2,568,508 - HP15_2427 0.30 +0.5 2,568,559 - HP15_2427 0.34 -0.5 2,568,559 - HP15_2427 0.34 -1.9 2,568,756 - HP15_2427 0.53 -0.9 2,569,057 + HP15_2427 0.82 -1.3 2,569,077 + HP15_2427 0.84 -1.4 2,569,277 - -0.9 2,569,400 - -0.6 2,569,408 + -0.8 2,570,182 + HP15_2428 0.59 -1.3 2,570,329 + HP15_2428 0.70 -2.6 2,570,329 + HP15_2428 0.70 -0.3 2,570,329 + HP15_2428 0.70 -0.9 2,570,728 + -0.3 2,570,773 - +0.1 2,570,981 + HP15_2429 0.33 -1.5 2,571,018 + HP15_2429 0.39 -0.7 2,571,018 + HP15_2429 0.39 -0.7 2,571,018 + HP15_2429 0.39 -1.0 2,571,026 - HP15_2429 0.40 -1.1 2,571,160 - HP15_2429 0.61 -0.3 2,571,200 + HP15_2429 0.67 -1.1 2,571,214 + HP15_2429 0.69 +0.2 2,571,214 - HP15_2429 0.69 -0.9
Or see this region's nucleotide sequence