Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2234 and HP15_2235 are separated by 737 nucleotides HP15_2235 and HP15_tRNA42 are separated by 129 nucleotides HP15_tRNA42 and HP15_tRNA43 are separated by 7 nucleotides HP15_tRNA43 and HP15_2236 are separated by 113 nucleotides
HP15_2234: HP15_2234 - CheY-like receiver protein, at 2,353,870 to 2,354,964
_2234
HP15_2235: HP15_2235 - 6-pyruvoyl tetrahydropterin synthase-like protein, at 2,355,702 to 2,356,553
_2235
HP15_tRNA42: HP15_tRNA42 - tRNA-Glu, at 2,356,683 to 2,356,758
_tRNA42
HP15_tRNA43: HP15_tRNA43 - tRNA-Ala, at 2,356,766 to 2,356,841
_tRNA43
HP15_2236: HP15_2236 - glutamyl-tRNA synthetase, at 2,356,955 to 2,358,376
_2236
Position (kb)
2355
2356
2357 Strain fitness (log2 ratio)
-2
-1
0
1 at 2354.738 kb on - strand, within HP15_2234 at 2354.738 kb on - strand, within HP15_2234 at 2354.828 kb on + strand, within HP15_2234 at 2354.828 kb on + strand, within HP15_2234 at 2354.876 kb on - strand at 2354.919 kb on - strand at 2354.920 kb on - strand at 2354.958 kb on + strand at 2354.970 kb on + strand at 2355.007 kb on - strand at 2355.099 kb on + strand at 2355.144 kb on + strand at 2355.164 kb on - strand at 2355.262 kb on - strand at 2355.265 kb on + strand at 2355.419 kb on + strand at 2355.637 kb on - strand at 2355.934 kb on - strand, within HP15_2235 at 2355.950 kb on + strand, within HP15_2235 at 2356.073 kb on + strand, within HP15_2235 at 2356.141 kb on - strand, within HP15_2235 at 2356.166 kb on - strand, within HP15_2235 at 2356.166 kb on - strand, within HP15_2235 at 2356.233 kb on - strand, within HP15_2235 at 2356.394 kb on + strand, within HP15_2235 at 2356.733 kb on + strand, within HP15_tRNA42 at 2356.734 kb on + strand, within HP15_tRNA42 at 2356.884 kb on + strand at 2356.924 kb on + strand at 2356.964 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 2,354,738 - HP15_2234 0.79 +0.1 2,354,738 - HP15_2234 0.79 +0.0 2,354,828 + HP15_2234 0.87 -0.1 2,354,828 + HP15_2234 0.87 +1.1 2,354,876 - -2.1 2,354,919 - -0.9 2,354,920 - -0.3 2,354,958 + -0.2 2,354,970 + -0.7 2,355,007 - -0.0 2,355,099 + -1.6 2,355,144 + -0.1 2,355,164 - -0.5 2,355,262 - +1.0 2,355,265 + -0.2 2,355,419 + +0.6 2,355,637 - +0.6 2,355,934 - HP15_2235 0.27 -0.8 2,355,950 + HP15_2235 0.29 -1.1 2,356,073 + HP15_2235 0.44 -0.1 2,356,141 - HP15_2235 0.52 -0.7 2,356,166 - HP15_2235 0.54 -0.6 2,356,166 - HP15_2235 0.54 -0.1 2,356,233 - HP15_2235 0.62 +0.0 2,356,394 + HP15_2235 0.81 +1.3 2,356,733 + HP15_tRNA42 0.66 -1.7 2,356,734 + HP15_tRNA42 0.67 +0.5 2,356,884 + -0.5 2,356,924 + +0.6 2,356,964 + +0.3
Or see this region's nucleotide sequence