Strain Fitness in Marinobacter adhaerens HP15 around HP15_2196

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2195 and HP15_2196 are separated by 90 nucleotidesHP15_2196 and HP15_2197 are separated by 243 nucleotides HP15_2195: HP15_2195 - amino acid ABC transporter, permease protein, at 2,312,058 to 2,313,245 _2195 HP15_2196: HP15_2196 - glutamate/glutamine/aspartate/asparagine ABC transporter, periplasmic substrate-binding protein, at 2,313,336 to 2,314,379 _2196 HP15_2197: HP15_2197 - conserved hypothetical protein, secreted, at 2,314,623 to 2,315,510 _2197 Position (kb) 2313 2314 2315Strain fitness (log2 ratio) -1 0 1at 2312.343 kb on + strand, within HP15_2195at 2312.351 kb on - strand, within HP15_2195at 2312.358 kb on - strand, within HP15_2195at 2312.366 kb on - strand, within HP15_2195at 2312.446 kb on - strand, within HP15_2195at 2312.453 kb on - strand, within HP15_2195at 2312.857 kb on + strand, within HP15_2195at 2312.973 kb on + strand, within HP15_2195at 2313.144 kb on - strandat 2313.144 kb on - strandat 2313.202 kb on + strandat 2313.210 kb on - strandat 2313.210 kb on - strandat 2313.269 kb on + strandat 2313.335 kb on - strandat 2313.381 kb on - strandat 2313.508 kb on + strand, within HP15_2196at 2313.583 kb on - strand, within HP15_2196at 2313.604 kb on + strand, within HP15_2196at 2313.604 kb on - strand, within HP15_2196at 2313.702 kb on + strand, within HP15_2196at 2313.779 kb on - strand, within HP15_2196at 2313.801 kb on + strand, within HP15_2196at 2313.803 kb on + strand, within HP15_2196at 2313.803 kb on + strand, within HP15_2196at 2313.823 kb on - strand, within HP15_2196at 2313.932 kb on + strand, within HP15_2196at 2313.980 kb on - strand, within HP15_2196at 2314.029 kb on + strand, within HP15_2196at 2314.105 kb on - strand, within HP15_2196at 2314.105 kb on - strand, within HP15_2196at 2314.316 kb on - strandat 2314.524 kb on - strandat 2314.797 kb on - strand, within HP15_2197at 2314.827 kb on + strand, within HP15_2197at 2314.830 kb on - strand, within HP15_2197at 2314.830 kb on - strand, within HP15_2197at 2314.981 kb on - strand, within HP15_2197at 2315.366 kb on - strand, within HP15_2197

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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2,312,343 + HP15_2195 0.24 -0.1
2,312,351 - HP15_2195 0.25 +0.2
2,312,358 - HP15_2195 0.25 +0.3
2,312,366 - HP15_2195 0.26 -1.6
2,312,446 - HP15_2195 0.33 -0.1
2,312,453 - HP15_2195 0.33 -0.3
2,312,857 + HP15_2195 0.67 -0.4
2,312,973 + HP15_2195 0.77 -0.3
2,313,144 - +0.4
2,313,144 - -0.3
2,313,202 + -0.4
2,313,210 - +0.9
2,313,210 - -0.7
2,313,269 + -0.9
2,313,335 - -0.1
2,313,381 - -0.3
2,313,508 + HP15_2196 0.16 -0.9
2,313,583 - HP15_2196 0.24 -1.1
2,313,604 + HP15_2196 0.26 -0.6
2,313,604 - HP15_2196 0.26 +0.5
2,313,702 + HP15_2196 0.35 +0.1
2,313,779 - HP15_2196 0.42 -0.7
2,313,801 + HP15_2196 0.45 -1.1
2,313,803 + HP15_2196 0.45 -0.3
2,313,803 + HP15_2196 0.45 -0.4
2,313,823 - HP15_2196 0.47 +1.2
2,313,932 + HP15_2196 0.57 -0.1
2,313,980 - HP15_2196 0.62 -0.2
2,314,029 + HP15_2196 0.66 -1.0
2,314,105 - HP15_2196 0.74 -0.4
2,314,105 - HP15_2196 0.74 -0.7
2,314,316 - -0.1
2,314,524 - -0.8
2,314,797 - HP15_2197 0.20 +0.3
2,314,827 + HP15_2197 0.23 -0.0
2,314,830 - HP15_2197 0.23 +0.1
2,314,830 - HP15_2197 0.23 -1.5
2,314,981 - HP15_2197 0.40 +0.2
2,315,366 - HP15_2197 0.84 +0.2

Or see this region's nucleotide sequence