Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2070 and HP15_2071 are separated by 123 nucleotides HP15_2071 and HP15_2072 are separated by 95 nucleotides HP15_2072 and HP15_2073 are separated by 152 nucleotides
HP15_2070: HP15_2070 - outer membrane-specific lipoprotein transporter subunit LolE, at 2,170,749 to 2,171,990
_2070
HP15_2071: HP15_2071 - conserved hypothetical protein, at 2,172,114 to 2,172,701
_2071
HP15_2072: HP15_2072 - conserved hypothetical protein, secreted, at 2,172,797 to 2,173,099
_2072
HP15_2073: HP15_2073 - peptidyl-arginine deiminase family protein, at 2,173,252 to 2,174,250
_2073
Position (kb)
2172
2173
2174 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2172.364 kb on - strand, within HP15_2071 at 2172.364 kb on - strand, within HP15_2071 at 2172.403 kb on - strand, within HP15_2071 at 2172.442 kb on + strand, within HP15_2071 at 2172.450 kb on - strand, within HP15_2071 at 2172.460 kb on - strand, within HP15_2071 at 2172.484 kb on + strand, within HP15_2071 at 2172.598 kb on + strand, within HP15_2071 at 2172.598 kb on + strand, within HP15_2071 at 2172.703 kb on - strand at 2172.820 kb on - strand at 2172.829 kb on + strand, within HP15_2072 at 2172.944 kb on - strand, within HP15_2072 at 2173.036 kb on + strand, within HP15_2072 at 2173.129 kb on - strand at 2173.228 kb on + strand at 2173.257 kb on + strand at 2173.649 kb on - strand, within HP15_2073 at 2173.879 kb on - strand, within HP15_2073 at 2173.917 kb on + strand, within HP15_2073 at 2173.959 kb on - strand, within HP15_2073 at 2173.996 kb on + strand, within HP15_2073 at 2174.004 kb on - strand, within HP15_2073 at 2174.009 kb on - strand, within HP15_2073 at 2174.029 kb on - strand, within HP15_2073
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 2,172,364 - HP15_2071 0.43 +0.1 2,172,364 - HP15_2071 0.43 +0.5 2,172,403 - HP15_2071 0.49 +0.5 2,172,442 + HP15_2071 0.56 +0.7 2,172,450 - HP15_2071 0.57 -0.1 2,172,460 - HP15_2071 0.59 -0.2 2,172,484 + HP15_2071 0.63 +2.6 2,172,598 + HP15_2071 0.82 -0.2 2,172,598 + HP15_2071 0.82 +1.5 2,172,703 - +0.0 2,172,820 - -0.4 2,172,829 + HP15_2072 0.11 -1.0 2,172,944 - HP15_2072 0.49 -0.7 2,173,036 + HP15_2072 0.79 +0.4 2,173,129 - +0.6 2,173,228 + +0.4 2,173,257 + +0.9 2,173,649 - HP15_2073 0.40 +0.7 2,173,879 - HP15_2073 0.63 -2.1 2,173,917 + HP15_2073 0.67 -0.3 2,173,959 - HP15_2073 0.71 -0.0 2,173,996 + HP15_2073 0.74 -0.2 2,174,004 - HP15_2073 0.75 +2.2 2,174,009 - HP15_2073 0.76 +0.2 2,174,029 - HP15_2073 0.78 -0.1
Or see this region's nucleotide sequence