Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2032 and HP15_tRNA36 are separated by 191 nucleotides HP15_tRNA36 and HP15_tRNA37 are separated by 68 nucleotides HP15_tRNA37 and HP15_2033 are separated by 85 nucleotides HP15_2033 and HP15_2034 are separated by 16 nucleotides HP15_2034 and HP15_2035 are separated by 67 nucleotides
HP15_2032: HP15_2032 - quinolinate synthetase complex, A subunit, at 2,132,218 to 2,133,279
_2032
HP15_tRNA36: HP15_tRNA36 - tRNA-Lys, at 2,133,471 to 2,133,546
_tRNA36
HP15_tRNA37: HP15_tRNA37 - tRNA-Lys, at 2,133,615 to 2,133,690
_tRNA37
HP15_2033: HP15_2033 - secreted protein containing Tol-Pal system, YbgF domain, at 2,133,776 to 2,134,522
_2033
HP15_2034: HP15_2034 - peptidoglycan-associated lipoprotein, at 2,134,539 to 2,135,111
_2034
HP15_2035: HP15_2035 - translocation protein TolB precursor, at 2,135,179 to 2,136,492
_2035
Position (kb)
2133
2134
2135 Strain fitness (log2 ratio)
-1
0
1 at 2133.295 kb on - strand at 2133.331 kb on + strand at 2133.356 kb on + strand at 2134.010 kb on - strand, within HP15_2033 at 2134.028 kb on + strand, within HP15_2033 at 2134.093 kb on - strand, within HP15_2033 at 2134.195 kb on - strand, within HP15_2033 at 2134.350 kb on + strand, within HP15_2033 at 2134.439 kb on + strand, within HP15_2033 at 2134.711 kb on - strand, within HP15_2034 at 2135.193 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 2,133,295 - +0.1 2,133,331 + -0.4 2,133,356 + +1.3 2,134,010 - HP15_2033 0.31 +0.0 2,134,028 + HP15_2033 0.34 -1.3 2,134,093 - HP15_2033 0.42 -0.2 2,134,195 - HP15_2033 0.56 -0.9 2,134,350 + HP15_2033 0.77 -0.6 2,134,439 + HP15_2033 0.89 -1.3 2,134,711 - HP15_2034 0.30 -1.3 2,135,193 - -0.2
Or see this region's nucleotide sequence