Strain Fitness in Marinobacter adhaerens HP15 around HP15_2033

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2032 and HP15_tRNA36 are separated by 191 nucleotidesHP15_tRNA36 and HP15_tRNA37 are separated by 68 nucleotidesHP15_tRNA37 and HP15_2033 are separated by 85 nucleotidesHP15_2033 and HP15_2034 are separated by 16 nucleotidesHP15_2034 and HP15_2035 are separated by 67 nucleotides HP15_2032: HP15_2032 - quinolinate synthetase complex, A subunit, at 2,132,218 to 2,133,279 _2032 HP15_tRNA36: HP15_tRNA36 - tRNA-Lys, at 2,133,471 to 2,133,546 _tRNA36 HP15_tRNA37: HP15_tRNA37 - tRNA-Lys, at 2,133,615 to 2,133,690 _tRNA37 HP15_2033: HP15_2033 - secreted protein containing Tol-Pal system, YbgF domain, at 2,133,776 to 2,134,522 _2033 HP15_2034: HP15_2034 - peptidoglycan-associated lipoprotein, at 2,134,539 to 2,135,111 _2034 HP15_2035: HP15_2035 - translocation protein TolB precursor, at 2,135,179 to 2,136,492 _2035 Position (kb) 2133 2134 2135Strain fitness (log2 ratio) -1 0 1at 2133.295 kb on - strandat 2133.331 kb on + strandat 2133.356 kb on + strandat 2134.010 kb on - strand, within HP15_2033at 2134.028 kb on + strand, within HP15_2033at 2134.093 kb on - strand, within HP15_2033at 2134.195 kb on - strand, within HP15_2033at 2134.350 kb on + strand, within HP15_2033at 2134.439 kb on + strand, within HP15_2033at 2134.711 kb on - strand, within HP15_2034at 2135.193 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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2,133,295 - +0.1
2,133,331 + -0.4
2,133,356 + +1.3
2,134,010 - HP15_2033 0.31 +0.0
2,134,028 + HP15_2033 0.34 -1.3
2,134,093 - HP15_2033 0.42 -0.2
2,134,195 - HP15_2033 0.56 -0.9
2,134,350 + HP15_2033 0.77 -0.6
2,134,439 + HP15_2033 0.89 -1.3
2,134,711 - HP15_2034 0.30 -1.3
2,135,193 - -0.2

Or see this region's nucleotide sequence