Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1998 and HP15_1999 overlap by 4 nucleotides HP15_1999 and HP15_2000 are separated by 159 nucleotides HP15_2000 and HP15_2001 are separated by 70 nucleotides HP15_2001 and HP15_2002 are separated by 12 nucleotides HP15_2002 and HP15_2003 overlap by 4 nucleotides
HP15_1998: HP15_1998 - conserved hypothetical protein, at 2,104,019 to 2,104,771
_1998
HP15_1999: HP15_1999 - hypothetical protein, at 2,104,768 to 2,105,268
_1999
HP15_2000: HP15_2000 - conserved hypothetical protein, at 2,105,428 to 2,105,706
_2000
HP15_2001: HP15_2001 - hypothetical protein, at 2,105,777 to 2,106,061
_2001
HP15_2002: HP15_2002 - conserved hypothetical protein, at 2,106,074 to 2,106,415
_2002
HP15_2003: HP15_2003 - hypothetical protein, at 2,106,412 to 2,106,843
_2003
Position (kb)
2105
2106 Strain fitness (log2 ratio)
-1
0
1
2 at 2104.578 kb on - strand, within HP15_1998 at 2104.609 kb on + strand, within HP15_1998 at 2104.619 kb on - strand, within HP15_1998 at 2104.651 kb on - strand, within HP15_1998 at 2104.854 kb on - strand, within HP15_1999 at 2104.924 kb on - strand, within HP15_1999 at 2104.975 kb on - strand, within HP15_1999 at 2105.051 kb on - strand, within HP15_1999 at 2105.051 kb on - strand, within HP15_1999 at 2105.051 kb on - strand, within HP15_1999 at 2105.051 kb on - strand, within HP15_1999 at 2105.115 kb on - strand, within HP15_1999 at 2105.134 kb on - strand, within HP15_1999 at 2105.277 kb on - strand at 2105.542 kb on - strand, within HP15_2000 at 2105.542 kb on - strand, within HP15_2000 at 2105.634 kb on - strand, within HP15_2000 at 2105.940 kb on - strand, within HP15_2001 at 2105.953 kb on - strand, within HP15_2001 at 2106.089 kb on - strand at 2106.277 kb on + strand, within HP15_2002 at 2106.295 kb on + strand, within HP15_2002 at 2106.365 kb on + strand, within HP15_2002 at 2106.416 kb on - strand at 2106.650 kb on - strand, within HP15_2003
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 2,104,578 - HP15_1998 0.74 +0.5 2,104,609 + HP15_1998 0.78 +0.3 2,104,619 - HP15_1998 0.80 -0.1 2,104,651 - HP15_1998 0.84 +0.5 2,104,854 - HP15_1999 0.17 -0.3 2,104,924 - HP15_1999 0.31 +0.3 2,104,975 - HP15_1999 0.41 -0.0 2,105,051 - HP15_1999 0.56 +0.2 2,105,051 - HP15_1999 0.56 +0.1 2,105,051 - HP15_1999 0.56 -0.0 2,105,051 - HP15_1999 0.56 +0.4 2,105,115 - HP15_1999 0.69 +0.2 2,105,134 - HP15_1999 0.73 +0.9 2,105,277 - +0.2 2,105,542 - HP15_2000 0.41 -0.3 2,105,542 - HP15_2000 0.41 -0.5 2,105,634 - HP15_2000 0.74 -0.3 2,105,940 - HP15_2001 0.57 +0.0 2,105,953 - HP15_2001 0.62 -0.1 2,106,089 - +0.2 2,106,277 + HP15_2002 0.59 -0.9 2,106,295 + HP15_2002 0.65 +0.3 2,106,365 + HP15_2002 0.85 +1.9 2,106,416 - +0.2 2,106,650 - HP15_2003 0.55 -0.2
Or see this region's nucleotide sequence