Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1845 and HP15_1846 overlap by 4 nucleotides HP15_1846 and HP15_1847 are separated by 76 nucleotides HP15_1847 and HP15_1848 are separated by 88 nucleotides HP15_1848 and HP15_1849 are separated by 134 nucleotides
HP15_1845: HP15_1845 - transglutaminase domain protein, at 1,944,168 to 1,946,243
_1845
HP15_1846: HP15_1846 - protein containing DUF58, at 1,946,240 to 1,947,157
_1846
HP15_1847: HP15_1847 - hypothetical protein, at 1,947,234 to 1,947,374
_1847
HP15_1848: HP15_1848 - conserved hypothetical protein, secreted, at 1,947,463 to 1,948,080
_1848
HP15_1849: HP15_1849 - conserved hypothetical protein, secreted, at 1,948,215 to 1,949,051
_1849
Position (kb)
1947
1948 Strain fitness (log2 ratio)
-1
0
1 at 1946.246 kb on - strand at 1946.257 kb on - strand at 1946.257 kb on - strand at 1946.262 kb on - strand at 1946.262 kb on - strand at 1946.337 kb on + strand, within HP15_1846 at 1946.549 kb on - strand, within HP15_1846 at 1946.684 kb on + strand, within HP15_1846 at 1946.741 kb on + strand, within HP15_1846 at 1946.776 kb on - strand, within HP15_1846 at 1946.908 kb on + strand, within HP15_1846 at 1946.910 kb on + strand, within HP15_1846 at 1946.957 kb on - strand, within HP15_1846 at 1947.049 kb on - strand, within HP15_1846 at 1947.282 kb on - strand, within HP15_1847 at 1947.287 kb on + strand, within HP15_1847 at 1947.500 kb on + strand at 1947.528 kb on - strand, within HP15_1848 at 1947.676 kb on - strand, within HP15_1848 at 1947.676 kb on - strand, within HP15_1848 at 1947.678 kb on + strand, within HP15_1848 at 1947.686 kb on - strand, within HP15_1848 at 1947.732 kb on + strand, within HP15_1848 at 1947.732 kb on + strand, within HP15_1848 at 1947.865 kb on - strand, within HP15_1848 at 1947.936 kb on - strand, within HP15_1848 at 1948.014 kb on + strand, within HP15_1848 at 1948.014 kb on + strand, within HP15_1848 at 1948.014 kb on + strand, within HP15_1848 at 1948.022 kb on - strand at 1948.058 kb on + strand at 1948.208 kb on + strand at 1948.222 kb on + strand at 1948.250 kb on + strand at 1948.367 kb on - strand, within HP15_1849
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 1,946,246 - -0.5 1,946,257 - +0.3 1,946,257 - -0.3 1,946,262 - -0.1 1,946,262 - -0.4 1,946,337 + HP15_1846 0.11 -0.9 1,946,549 - HP15_1846 0.34 -0.6 1,946,684 + HP15_1846 0.48 -0.3 1,946,741 + HP15_1846 0.55 +0.1 1,946,776 - HP15_1846 0.58 +0.5 1,946,908 + HP15_1846 0.73 -0.9 1,946,910 + HP15_1846 0.73 +0.8 1,946,957 - HP15_1846 0.78 +0.5 1,947,049 - HP15_1846 0.88 -0.3 1,947,282 - HP15_1847 0.34 -1.6 1,947,287 + HP15_1847 0.38 -0.2 1,947,500 + +0.2 1,947,528 - HP15_1848 0.11 -1.3 1,947,676 - HP15_1848 0.34 +0.2 1,947,676 - HP15_1848 0.34 -0.5 1,947,678 + HP15_1848 0.35 -0.1 1,947,686 - HP15_1848 0.36 +0.3 1,947,732 + HP15_1848 0.44 -1.0 1,947,732 + HP15_1848 0.44 -0.1 1,947,865 - HP15_1848 0.65 +0.7 1,947,936 - HP15_1848 0.77 +0.5 1,948,014 + HP15_1848 0.89 +0.0 1,948,014 + HP15_1848 0.89 +0.3 1,948,014 + HP15_1848 0.89 +0.4 1,948,022 - -0.3 1,948,058 + -0.6 1,948,208 + -0.5 1,948,222 + -0.5 1,948,250 + +0.1 1,948,367 - HP15_1849 0.18 +0.3
Or see this region's nucleotide sequence