Strain Fitness in Marinobacter adhaerens HP15 around HP15_1847

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1845 and HP15_1846 overlap by 4 nucleotidesHP15_1846 and HP15_1847 are separated by 76 nucleotidesHP15_1847 and HP15_1848 are separated by 88 nucleotidesHP15_1848 and HP15_1849 are separated by 134 nucleotides HP15_1845: HP15_1845 - transglutaminase domain protein, at 1,944,168 to 1,946,243 _1845 HP15_1846: HP15_1846 - protein containing DUF58, at 1,946,240 to 1,947,157 _1846 HP15_1847: HP15_1847 - hypothetical protein, at 1,947,234 to 1,947,374 _1847 HP15_1848: HP15_1848 - conserved hypothetical protein, secreted, at 1,947,463 to 1,948,080 _1848 HP15_1849: HP15_1849 - conserved hypothetical protein, secreted, at 1,948,215 to 1,949,051 _1849 Position (kb) 1947 1948Strain fitness (log2 ratio) -1 0 1at 1946.246 kb on - strandat 1946.257 kb on - strandat 1946.257 kb on - strandat 1946.262 kb on - strandat 1946.262 kb on - strandat 1946.337 kb on + strand, within HP15_1846at 1946.549 kb on - strand, within HP15_1846at 1946.684 kb on + strand, within HP15_1846at 1946.741 kb on + strand, within HP15_1846at 1946.776 kb on - strand, within HP15_1846at 1946.908 kb on + strand, within HP15_1846at 1946.910 kb on + strand, within HP15_1846at 1946.957 kb on - strand, within HP15_1846at 1947.049 kb on - strand, within HP15_1846at 1947.282 kb on - strand, within HP15_1847at 1947.287 kb on + strand, within HP15_1847at 1947.500 kb on + strandat 1947.528 kb on - strand, within HP15_1848at 1947.676 kb on - strand, within HP15_1848at 1947.676 kb on - strand, within HP15_1848at 1947.678 kb on + strand, within HP15_1848at 1947.686 kb on - strand, within HP15_1848at 1947.732 kb on + strand, within HP15_1848at 1947.732 kb on + strand, within HP15_1848at 1947.865 kb on - strand, within HP15_1848at 1947.936 kb on - strand, within HP15_1848at 1948.014 kb on + strand, within HP15_1848at 1948.014 kb on + strand, within HP15_1848at 1948.014 kb on + strand, within HP15_1848at 1948.022 kb on - strandat 1948.058 kb on + strandat 1948.208 kb on + strandat 1948.222 kb on + strandat 1948.250 kb on + strandat 1948.367 kb on - strand, within HP15_1849

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,946,246 - -0.5
1,946,257 - +0.3
1,946,257 - -0.3
1,946,262 - -0.1
1,946,262 - -0.4
1,946,337 + HP15_1846 0.11 -0.9
1,946,549 - HP15_1846 0.34 -0.6
1,946,684 + HP15_1846 0.48 -0.3
1,946,741 + HP15_1846 0.55 +0.1
1,946,776 - HP15_1846 0.58 +0.5
1,946,908 + HP15_1846 0.73 -0.9
1,946,910 + HP15_1846 0.73 +0.8
1,946,957 - HP15_1846 0.78 +0.5
1,947,049 - HP15_1846 0.88 -0.3
1,947,282 - HP15_1847 0.34 -1.6
1,947,287 + HP15_1847 0.38 -0.2
1,947,500 + +0.2
1,947,528 - HP15_1848 0.11 -1.3
1,947,676 - HP15_1848 0.34 +0.2
1,947,676 - HP15_1848 0.34 -0.5
1,947,678 + HP15_1848 0.35 -0.1
1,947,686 - HP15_1848 0.36 +0.3
1,947,732 + HP15_1848 0.44 -1.0
1,947,732 + HP15_1848 0.44 -0.1
1,947,865 - HP15_1848 0.65 +0.7
1,947,936 - HP15_1848 0.77 +0.5
1,948,014 + HP15_1848 0.89 +0.0
1,948,014 + HP15_1848 0.89 +0.3
1,948,014 + HP15_1848 0.89 +0.4
1,948,022 - -0.3
1,948,058 + -0.6
1,948,208 + -0.5
1,948,222 + -0.5
1,948,250 + +0.1
1,948,367 - HP15_1849 0.18 +0.3

Or see this region's nucleotide sequence