Strain Fitness in Marinobacter adhaerens HP15 around HP15_1792

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1791 and HP15_1792 are separated by 232 nucleotidesHP15_1792 and HP15_1793 are separated by 33 nucleotidesHP15_1793 and HP15_1794 are separated by 1 nucleotidesHP15_1794 and HP15_1795 are separated by 284 nucleotides HP15_1791: HP15_1791 - yhgI protein, at 1,882,347 to 1,882,934 _1791 HP15_1792: HP15_1792 - B12-dependent methionine synthase, at 1,883,167 to 1,886,865 _1792 HP15_1793: HP15_1793 - conserved hypothetical protein, at 1,886,899 to 1,887,135 _1793 HP15_1794: HP15_1794 - secreted protein, at 1,887,137 to 1,887,241 _1794 HP15_1795: HP15_1795 - sulfite reductase hemoprotein, beta subunit, at 1,887,526 to 1,889,148 _1795 Position (kb) 1883 1884 1885 1886 1887Strain fitness (log2 ratio) -2 -1 0 1at 1882.193 kb on + strandat 1882.193 kb on + strandat 1882.201 kb on - strandat 1882.201 kb on - strandat 1882.201 kb on - strandat 1883.194 kb on - strandat 1883.199 kb on + strandat 1883.320 kb on + strandat 1883.330 kb on + strandat 1883.431 kb on - strandat 1883.440 kb on - strandat 1883.529 kb on - strandat 1883.576 kb on + strand, within HP15_1792at 1883.601 kb on - strand, within HP15_1792at 1883.771 kb on + strand, within HP15_1792at 1883.779 kb on - strand, within HP15_1792at 1883.886 kb on + strand, within HP15_1792at 1883.886 kb on + strand, within HP15_1792at 1883.894 kb on - strand, within HP15_1792at 1884.045 kb on - strand, within HP15_1792at 1884.206 kb on + strand, within HP15_1792at 1884.214 kb on - strand, within HP15_1792at 1884.375 kb on - strand, within HP15_1792at 1884.500 kb on + strand, within HP15_1792at 1884.525 kb on - strand, within HP15_1792at 1884.559 kb on + strand, within HP15_1792at 1884.653 kb on + strand, within HP15_1792at 1884.694 kb on + strand, within HP15_1792at 1884.718 kb on - strand, within HP15_1792at 1885.071 kb on - strand, within HP15_1792at 1885.125 kb on - strand, within HP15_1792at 1885.165 kb on - strand, within HP15_1792at 1885.167 kb on + strand, within HP15_1792at 1885.167 kb on + strand, within HP15_1792at 1885.175 kb on - strand, within HP15_1792at 1885.175 kb on - strand, within HP15_1792at 1885.220 kb on + strand, within HP15_1792at 1885.220 kb on + strand, within HP15_1792at 1885.228 kb on - strand, within HP15_1792at 1885.469 kb on - strand, within HP15_1792at 1885.679 kb on + strand, within HP15_1792at 1885.836 kb on - strand, within HP15_1792at 1885.940 kb on - strand, within HP15_1792at 1886.185 kb on + strand, within HP15_1792at 1886.229 kb on - strand, within HP15_1792at 1886.229 kb on - strand, within HP15_1792at 1886.229 kb on - strand, within HP15_1792at 1886.241 kb on + strand, within HP15_1792at 1886.253 kb on + strand, within HP15_1792at 1886.300 kb on - strand, within HP15_1792at 1886.516 kb on - strandat 1886.891 kb on - strandat 1887.072 kb on + strand, within HP15_1793at 1887.158 kb on - strand, within HP15_1794at 1887.244 kb on + strandat 1887.304 kb on + strandat 1887.353 kb on + strandat 1887.426 kb on + strandat 1887.649 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,882,193 + -0.3
1,882,193 + -0.1
1,882,201 - -0.0
1,882,201 - -0.1
1,882,201 - +0.5
1,883,194 - -0.6
1,883,199 + -0.6
1,883,320 + -0.5
1,883,330 + -0.5
1,883,431 - -0.4
1,883,440 - -0.5
1,883,529 - -1.0
1,883,576 + HP15_1792 0.11 -0.2
1,883,601 - HP15_1792 0.12 -0.6
1,883,771 + HP15_1792 0.16 -1.2
1,883,779 - HP15_1792 0.17 -0.7
1,883,886 + HP15_1792 0.19 +1.3
1,883,886 + HP15_1792 0.19 -1.4
1,883,894 - HP15_1792 0.20 -0.9
1,884,045 - HP15_1792 0.24 -0.5
1,884,206 + HP15_1792 0.28 -0.5
1,884,214 - HP15_1792 0.28 -1.0
1,884,375 - HP15_1792 0.33 -0.1
1,884,500 + HP15_1792 0.36 -0.2
1,884,525 - HP15_1792 0.37 -0.2
1,884,559 + HP15_1792 0.38 -0.3
1,884,653 + HP15_1792 0.40 -0.7
1,884,694 + HP15_1792 0.41 -1.1
1,884,718 - HP15_1792 0.42 -0.3
1,885,071 - HP15_1792 0.51 -0.1
1,885,125 - HP15_1792 0.53 -1.6
1,885,165 - HP15_1792 0.54 -0.3
1,885,167 + HP15_1792 0.54 -0.0
1,885,167 + HP15_1792 0.54 -0.3
1,885,175 - HP15_1792 0.54 -2.0
1,885,175 - HP15_1792 0.54 -0.3
1,885,220 + HP15_1792 0.56 -0.5
1,885,220 + HP15_1792 0.56 -0.4
1,885,228 - HP15_1792 0.56 +0.7
1,885,469 - HP15_1792 0.62 -0.8
1,885,679 + HP15_1792 0.68 +0.2
1,885,836 - HP15_1792 0.72 +1.2
1,885,940 - HP15_1792 0.75 -0.1
1,886,185 + HP15_1792 0.82 -0.5
1,886,229 - HP15_1792 0.83 +0.0
1,886,229 - HP15_1792 0.83 +0.9
1,886,229 - HP15_1792 0.83 +0.1
1,886,241 + HP15_1792 0.83 -0.3
1,886,253 + HP15_1792 0.83 -0.5
1,886,300 - HP15_1792 0.85 -1.2
1,886,516 - +0.0
1,886,891 - -0.1
1,887,072 + HP15_1793 0.73 +0.6
1,887,158 - HP15_1794 0.20 -0.1
1,887,244 + -0.3
1,887,304 + -0.3
1,887,353 + -0.4
1,887,426 + -1.4
1,887,649 - -1.0

Or see this region's nucleotide sequence