Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1791 and HP15_1792 are separated by 232 nucleotides HP15_1792 and HP15_1793 are separated by 33 nucleotides HP15_1793 and HP15_1794 are separated by 1 nucleotides HP15_1794 and HP15_1795 are separated by 284 nucleotides
HP15_1791: HP15_1791 - yhgI protein, at 1,882,347 to 1,882,934
_1791
HP15_1792: HP15_1792 - B12-dependent methionine synthase, at 1,883,167 to 1,886,865
_1792
HP15_1793: HP15_1793 - conserved hypothetical protein, at 1,886,899 to 1,887,135
_1793
HP15_1794: HP15_1794 - secreted protein, at 1,887,137 to 1,887,241
_1794
HP15_1795: HP15_1795 - sulfite reductase hemoprotein, beta subunit, at 1,887,526 to 1,889,148
_1795
Position (kb)
1883
1884
1885
1886
1887 Strain fitness (log2 ratio)
-2
-1
0
1 at 1882.193 kb on + strand at 1882.193 kb on + strand at 1882.201 kb on - strand at 1882.201 kb on - strand at 1882.201 kb on - strand at 1883.194 kb on - strand at 1883.199 kb on + strand at 1883.320 kb on + strand at 1883.330 kb on + strand at 1883.431 kb on - strand at 1883.440 kb on - strand at 1883.529 kb on - strand at 1883.576 kb on + strand, within HP15_1792 at 1883.601 kb on - strand, within HP15_1792 at 1883.771 kb on + strand, within HP15_1792 at 1883.779 kb on - strand, within HP15_1792 at 1883.886 kb on + strand, within HP15_1792 at 1883.886 kb on + strand, within HP15_1792 at 1883.894 kb on - strand, within HP15_1792 at 1884.045 kb on - strand, within HP15_1792 at 1884.206 kb on + strand, within HP15_1792 at 1884.214 kb on - strand, within HP15_1792 at 1884.375 kb on - strand, within HP15_1792 at 1884.500 kb on + strand, within HP15_1792 at 1884.525 kb on - strand, within HP15_1792 at 1884.559 kb on + strand, within HP15_1792 at 1884.653 kb on + strand, within HP15_1792 at 1884.694 kb on + strand, within HP15_1792 at 1884.718 kb on - strand, within HP15_1792 at 1885.071 kb on - strand, within HP15_1792 at 1885.125 kb on - strand, within HP15_1792 at 1885.165 kb on - strand, within HP15_1792 at 1885.167 kb on + strand, within HP15_1792 at 1885.167 kb on + strand, within HP15_1792 at 1885.175 kb on - strand, within HP15_1792 at 1885.175 kb on - strand, within HP15_1792 at 1885.220 kb on + strand, within HP15_1792 at 1885.220 kb on + strand, within HP15_1792 at 1885.228 kb on - strand, within HP15_1792 at 1885.469 kb on - strand, within HP15_1792 at 1885.679 kb on + strand, within HP15_1792 at 1885.836 kb on - strand, within HP15_1792 at 1885.940 kb on - strand, within HP15_1792 at 1886.185 kb on + strand, within HP15_1792 at 1886.229 kb on - strand, within HP15_1792 at 1886.229 kb on - strand, within HP15_1792 at 1886.229 kb on - strand, within HP15_1792 at 1886.241 kb on + strand, within HP15_1792 at 1886.253 kb on + strand, within HP15_1792 at 1886.300 kb on - strand, within HP15_1792 at 1886.516 kb on - strand at 1886.891 kb on - strand at 1887.072 kb on + strand, within HP15_1793 at 1887.158 kb on - strand, within HP15_1794 at 1887.244 kb on + strand at 1887.304 kb on + strand at 1887.353 kb on + strand at 1887.426 kb on + strand at 1887.649 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 1,882,193 + -0.3 1,882,193 + -0.1 1,882,201 - -0.0 1,882,201 - -0.1 1,882,201 - +0.5 1,883,194 - -0.6 1,883,199 + -0.6 1,883,320 + -0.5 1,883,330 + -0.5 1,883,431 - -0.4 1,883,440 - -0.5 1,883,529 - -1.0 1,883,576 + HP15_1792 0.11 -0.2 1,883,601 - HP15_1792 0.12 -0.6 1,883,771 + HP15_1792 0.16 -1.2 1,883,779 - HP15_1792 0.17 -0.7 1,883,886 + HP15_1792 0.19 +1.3 1,883,886 + HP15_1792 0.19 -1.4 1,883,894 - HP15_1792 0.20 -0.9 1,884,045 - HP15_1792 0.24 -0.5 1,884,206 + HP15_1792 0.28 -0.5 1,884,214 - HP15_1792 0.28 -1.0 1,884,375 - HP15_1792 0.33 -0.1 1,884,500 + HP15_1792 0.36 -0.2 1,884,525 - HP15_1792 0.37 -0.2 1,884,559 + HP15_1792 0.38 -0.3 1,884,653 + HP15_1792 0.40 -0.7 1,884,694 + HP15_1792 0.41 -1.1 1,884,718 - HP15_1792 0.42 -0.3 1,885,071 - HP15_1792 0.51 -0.1 1,885,125 - HP15_1792 0.53 -1.6 1,885,165 - HP15_1792 0.54 -0.3 1,885,167 + HP15_1792 0.54 -0.0 1,885,167 + HP15_1792 0.54 -0.3 1,885,175 - HP15_1792 0.54 -2.0 1,885,175 - HP15_1792 0.54 -0.3 1,885,220 + HP15_1792 0.56 -0.5 1,885,220 + HP15_1792 0.56 -0.4 1,885,228 - HP15_1792 0.56 +0.7 1,885,469 - HP15_1792 0.62 -0.8 1,885,679 + HP15_1792 0.68 +0.2 1,885,836 - HP15_1792 0.72 +1.2 1,885,940 - HP15_1792 0.75 -0.1 1,886,185 + HP15_1792 0.82 -0.5 1,886,229 - HP15_1792 0.83 +0.0 1,886,229 - HP15_1792 0.83 +0.9 1,886,229 - HP15_1792 0.83 +0.1 1,886,241 + HP15_1792 0.83 -0.3 1,886,253 + HP15_1792 0.83 -0.5 1,886,300 - HP15_1792 0.85 -1.2 1,886,516 - +0.0 1,886,891 - -0.1 1,887,072 + HP15_1793 0.73 +0.6 1,887,158 - HP15_1794 0.20 -0.1 1,887,244 + -0.3 1,887,304 + -0.3 1,887,353 + -0.4 1,887,426 + -1.4 1,887,649 - -1.0
Or see this region's nucleotide sequence