Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1744 and HP15_tRNA33 are separated by 193 nucleotides HP15_tRNA33 and HP15_1745 are separated by 75 nucleotides HP15_1745 and HP15_1746 are separated by 171 nucleotides
HP15_1744: HP15_1744 - AAA ATPase central domain protein, at 1,842,168 to 1,843,142
_1744
HP15_tRNA33: HP15_tRNA33 - tRNA-Leu, at 1,843,336 to 1,843,422
_tRNA33
HP15_1745: HP15_1745 - methyltransferase type 11, at 1,843,498 to 1,844,151
_1745
HP15_1746: HP15_1746 - cytochrome d ubiquinol oxidase subunit I, at 1,844,323 to 1,845,765
_1746
Position (kb)
1843
1844
1845 Strain fitness (log2 ratio)
-2
-1
0
1 at 1842.691 kb on + strand, within HP15_1744 at 1843.117 kb on + strand at 1843.152 kb on - strand at 1843.311 kb on + strand at 1843.511 kb on - strand at 1843.513 kb on + strand at 1843.523 kb on + strand at 1843.576 kb on - strand, within HP15_1745 at 1843.576 kb on - strand, within HP15_1745 at 1843.634 kb on - strand, within HP15_1745 at 1843.634 kb on - strand, within HP15_1745 at 1843.787 kb on - strand, within HP15_1745 at 1843.813 kb on - strand, within HP15_1745 at 1843.815 kb on + strand, within HP15_1745 at 1843.815 kb on + strand, within HP15_1745 at 1843.815 kb on + strand, within HP15_1745 at 1843.815 kb on + strand, within HP15_1745 at 1843.815 kb on + strand, within HP15_1745 at 1843.823 kb on - strand, within HP15_1745 at 1843.823 kb on - strand, within HP15_1745 at 1843.823 kb on - strand, within HP15_1745 at 1843.823 kb on - strand, within HP15_1745 at 1843.823 kb on - strand, within HP15_1745 at 1843.835 kb on - strand, within HP15_1745 at 1843.835 kb on - strand, within HP15_1745 at 1843.919 kb on + strand, within HP15_1745 at 1843.921 kb on - strand, within HP15_1745 at 1843.941 kb on + strand, within HP15_1745 at 1844.123 kb on - strand at 1844.162 kb on + strand at 1844.194 kb on - strand at 1844.317 kb on - strand at 1844.421 kb on - strand at 1844.483 kb on - strand, within HP15_1746 at 1844.588 kb on + strand, within HP15_1746 at 1844.611 kb on - strand, within HP15_1746 at 1844.696 kb on + strand, within HP15_1746 at 1844.748 kb on + strand, within HP15_1746 at 1844.748 kb on + strand, within HP15_1746 at 1844.825 kb on - strand, within HP15_1746 at 1844.930 kb on + strand, within HP15_1746 at 1844.987 kb on - strand, within HP15_1746 at 1845.025 kb on + strand, within HP15_1746
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 1,842,691 + HP15_1744 0.54 +0.7 1,843,117 + -2.0 1,843,152 - +0.0 1,843,311 + +0.0 1,843,511 - +0.4 1,843,513 + -0.3 1,843,523 + +0.3 1,843,576 - HP15_1745 0.12 -0.9 1,843,576 - HP15_1745 0.12 -0.6 1,843,634 - HP15_1745 0.21 -0.9 1,843,634 - HP15_1745 0.21 -0.5 1,843,787 - HP15_1745 0.44 -0.3 1,843,813 - HP15_1745 0.48 -0.7 1,843,815 + HP15_1745 0.48 -0.3 1,843,815 + HP15_1745 0.48 -0.4 1,843,815 + HP15_1745 0.48 +0.0 1,843,815 + HP15_1745 0.48 +1.0 1,843,815 + HP15_1745 0.48 -0.4 1,843,823 - HP15_1745 0.50 +0.4 1,843,823 - HP15_1745 0.50 -0.9 1,843,823 - HP15_1745 0.50 +0.3 1,843,823 - HP15_1745 0.50 -0.7 1,843,823 - HP15_1745 0.50 -2.0 1,843,835 - HP15_1745 0.52 -0.6 1,843,835 - HP15_1745 0.52 +0.5 1,843,919 + HP15_1745 0.64 -0.1 1,843,921 - HP15_1745 0.65 +0.2 1,843,941 + HP15_1745 0.68 -0.1 1,844,123 - -0.1 1,844,162 + -0.3 1,844,194 - -0.9 1,844,317 - +0.4 1,844,421 - -0.3 1,844,483 - HP15_1746 0.11 -0.0 1,844,588 + HP15_1746 0.18 +0.1 1,844,611 - HP15_1746 0.20 +0.7 1,844,696 + HP15_1746 0.26 +0.2 1,844,748 + HP15_1746 0.29 -0.3 1,844,748 + HP15_1746 0.29 -1.7 1,844,825 - HP15_1746 0.35 -0.5 1,844,930 + HP15_1746 0.42 +0.1 1,844,987 - HP15_1746 0.46 +0.6 1,845,025 + HP15_1746 0.49 +0.2
Or see this region's nucleotide sequence