Strain Fitness in Marinobacter adhaerens HP15 around HP15_1617

Experiment: L-Proline (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1616 and HP15_1618 are separated by 14 nucleotidesHP15_1618 and HP15_1617 are separated by 138 nucleotidesHP15_1617 and HP15_1619 overlap by 28 nucleotidesHP15_1619 and HP15_1620 are separated by 81 nucleotides HP15_1616: HP15_1616 - protein containing DnaJ domain, at 1,714,037 to 1,714,681 _1616 HP15_1618: HP15_1618 - uncharacterized conserved protein UCP026166, sodium bile acid symporter, at 1,714,696 to 1,715,451 _1618 HP15_1617: HP15_1617 - hypothetical protein, at 1,715,590 to 1,715,721 _1617 HP15_1619: HP15_1619 - GntR domain protein, at 1,715,694 to 1,716,371 _1619 HP15_1620: HP15_1620 - flavin-containing monooxygenase FMO, at 1,716,453 to 1,718,018 _1620 Position (kb) 1715 1716Strain fitness (log2 ratio) -2 -1 0 1at 1714.663 kb on - strandat 1714.677 kb on + strandat 1714.720 kb on - strandat 1714.749 kb on - strandat 1714.765 kb on - strandat 1714.882 kb on + strand, within HP15_1618at 1714.980 kb on + strand, within HP15_1618at 1715.325 kb on + strand, within HP15_1618at 1715.358 kb on - strand, within HP15_1618at 1715.416 kb on - strandat 1715.518 kb on + strandat 1715.535 kb on + strandat 1715.600 kb on - strandat 1715.663 kb on + strand, within HP15_1617at 1715.671 kb on - strand, within HP15_1617at 1715.700 kb on - strandat 1715.927 kb on + strand, within HP15_1619at 1715.969 kb on + strand, within HP15_1619at 1716.133 kb on - strand, within HP15_1619at 1716.246 kb on - strand, within HP15_1619at 1716.291 kb on + strand, within HP15_1619at 1716.488 kb on + strandat 1716.504 kb on - strandat 1716.553 kb on + strandat 1716.561 kb on - strandat 1716.597 kb on + strandat 1716.605 kb on - strandat 1716.621 kb on + strand, within HP15_1620at 1716.716 kb on - strand, within HP15_1620

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
remove
1,714,663 - -0.1
1,714,677 + +0.9
1,714,720 - +0.1
1,714,749 - -1.3
1,714,765 - -0.5
1,714,882 + HP15_1618 0.25 -0.6
1,714,980 + HP15_1618 0.38 -1.9
1,715,325 + HP15_1618 0.83 +0.3
1,715,358 - HP15_1618 0.88 +0.1
1,715,416 - +0.3
1,715,518 + -0.1
1,715,535 + -0.4
1,715,600 - -0.7
1,715,663 + HP15_1617 0.55 -2.0
1,715,671 - HP15_1617 0.61 +0.1
1,715,700 - -0.0
1,715,927 + HP15_1619 0.34 +0.0
1,715,969 + HP15_1619 0.41 +0.0
1,716,133 - HP15_1619 0.65 -0.5
1,716,246 - HP15_1619 0.81 -0.3
1,716,291 + HP15_1619 0.88 +0.3
1,716,488 + +1.2
1,716,504 - -0.4
1,716,553 + -0.9
1,716,561 - -0.1
1,716,597 + +0.3
1,716,605 - -0.3
1,716,621 + HP15_1620 0.11 -0.3
1,716,716 - HP15_1620 0.17 +0.7

Or see this region's nucleotide sequence