Strain Fitness in Marinobacter adhaerens HP15 around HP15_1605

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1603 and HP15_1604 are separated by 67 nucleotidesHP15_1604 and HP15_1605 are separated by 6 nucleotidesHP15_1605 and HP15_1606 overlap by 4 nucleotidesHP15_1606 and HP15_1607 are separated by 59 nucleotides HP15_1603: HP15_1603 - general secretion pathway protein F, at 1,700,388 to 1,701,599 _1603 HP15_1604: HP15_1604 - general secretion pathway protein G, at 1,701,667 to 1,702,119 _1604 HP15_1605: HP15_1605 - general secretion pathway protein H, at 1,702,126 to 1,702,656 _1605 HP15_1606: HP15_1606 - general secretion pathway protein I-like protein, at 1,702,653 to 1,703,027 _1606 HP15_1607: HP15_1607 - general secretion pathway protein J-like protein, at 1,703,087 to 1,703,803 _1607 Position (kb) 1702 1703Strain fitness (log2 ratio) -1 0 1at 1701.129 kb on - strand, within HP15_1603at 1701.193 kb on - strand, within HP15_1603at 1701.418 kb on - strand, within HP15_1603at 1701.458 kb on + strand, within HP15_1603at 1701.529 kb on + strandat 1701.707 kb on + strandat 1701.715 kb on - strand, within HP15_1604at 1701.715 kb on - strand, within HP15_1604at 1701.715 kb on - strand, within HP15_1604at 1701.715 kb on - strand, within HP15_1604at 1701.783 kb on + strand, within HP15_1604at 1701.971 kb on - strand, within HP15_1604at 1702.122 kb on - strandat 1702.122 kb on - strandat 1702.144 kb on - strandat 1702.169 kb on - strandat 1702.280 kb on - strand, within HP15_1605at 1702.289 kb on - strand, within HP15_1605at 1702.500 kb on + strand, within HP15_1605at 1702.612 kb on - strandat 1702.883 kb on + strand, within HP15_1606at 1703.335 kb on - strand, within HP15_1607at 1703.374 kb on - strand, within HP15_1607at 1703.394 kb on - strand, within HP15_1607at 1703.649 kb on + strand, within HP15_1607

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,701,129 - HP15_1603 0.61 -0.4
1,701,193 - HP15_1603 0.66 -1.3
1,701,418 - HP15_1603 0.85 -0.9
1,701,458 + HP15_1603 0.88 -0.7
1,701,529 + +0.0
1,701,707 + -0.3
1,701,715 - HP15_1604 0.11 -0.2
1,701,715 - HP15_1604 0.11 +0.5
1,701,715 - HP15_1604 0.11 +0.1
1,701,715 - HP15_1604 0.11 -0.4
1,701,783 + HP15_1604 0.26 +0.1
1,701,971 - HP15_1604 0.67 -1.0
1,702,122 - -0.6
1,702,122 - -0.9
1,702,144 - +0.6
1,702,169 - +0.4
1,702,280 - HP15_1605 0.29 -0.6
1,702,289 - HP15_1605 0.31 -1.6
1,702,500 + HP15_1605 0.70 -0.8
1,702,612 - -0.7
1,702,883 + HP15_1606 0.61 +0.2
1,703,335 - HP15_1607 0.35 -0.9
1,703,374 - HP15_1607 0.40 -1.2
1,703,394 - HP15_1607 0.43 +1.4
1,703,649 + HP15_1607 0.78 -0.3

Or see this region's nucleotide sequence