Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1603 and HP15_1604 are separated by 67 nucleotides HP15_1604 and HP15_1605 are separated by 6 nucleotides HP15_1605 and HP15_1606 overlap by 4 nucleotides HP15_1606 and HP15_1607 are separated by 59 nucleotides
HP15_1603: HP15_1603 - general secretion pathway protein F, at 1,700,388 to 1,701,599
_1603
HP15_1604: HP15_1604 - general secretion pathway protein G, at 1,701,667 to 1,702,119
_1604
HP15_1605: HP15_1605 - general secretion pathway protein H, at 1,702,126 to 1,702,656
_1605
HP15_1606: HP15_1606 - general secretion pathway protein I-like protein, at 1,702,653 to 1,703,027
_1606
HP15_1607: HP15_1607 - general secretion pathway protein J-like protein, at 1,703,087 to 1,703,803
_1607
Position (kb)
1702
1703 Strain fitness (log2 ratio)
-1
0
1 at 1701.129 kb on - strand, within HP15_1603 at 1701.193 kb on - strand, within HP15_1603 at 1701.418 kb on - strand, within HP15_1603 at 1701.458 kb on + strand, within HP15_1603 at 1701.529 kb on + strand at 1701.707 kb on + strand at 1701.715 kb on - strand, within HP15_1604 at 1701.715 kb on - strand, within HP15_1604 at 1701.715 kb on - strand, within HP15_1604 at 1701.715 kb on - strand, within HP15_1604 at 1701.783 kb on + strand, within HP15_1604 at 1701.971 kb on - strand, within HP15_1604 at 1702.122 kb on - strand at 1702.122 kb on - strand at 1702.144 kb on - strand at 1702.169 kb on - strand at 1702.280 kb on - strand, within HP15_1605 at 1702.289 kb on - strand, within HP15_1605 at 1702.500 kb on + strand, within HP15_1605 at 1702.612 kb on - strand at 1702.883 kb on + strand, within HP15_1606 at 1703.335 kb on - strand, within HP15_1607 at 1703.374 kb on - strand, within HP15_1607 at 1703.394 kb on - strand, within HP15_1607 at 1703.649 kb on + strand, within HP15_1607
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 1,701,129 - HP15_1603 0.61 -0.4 1,701,193 - HP15_1603 0.66 -1.3 1,701,418 - HP15_1603 0.85 -0.9 1,701,458 + HP15_1603 0.88 -0.7 1,701,529 + +0.0 1,701,707 + -0.3 1,701,715 - HP15_1604 0.11 -0.2 1,701,715 - HP15_1604 0.11 +0.5 1,701,715 - HP15_1604 0.11 +0.1 1,701,715 - HP15_1604 0.11 -0.4 1,701,783 + HP15_1604 0.26 +0.1 1,701,971 - HP15_1604 0.67 -1.0 1,702,122 - -0.6 1,702,122 - -0.9 1,702,144 - +0.6 1,702,169 - +0.4 1,702,280 - HP15_1605 0.29 -0.6 1,702,289 - HP15_1605 0.31 -1.6 1,702,500 + HP15_1605 0.70 -0.8 1,702,612 - -0.7 1,702,883 + HP15_1606 0.61 +0.2 1,703,335 - HP15_1607 0.35 -0.9 1,703,374 - HP15_1607 0.40 -1.2 1,703,394 - HP15_1607 0.43 +1.4 1,703,649 + HP15_1607 0.78 -0.3
Or see this region's nucleotide sequence