Strain Fitness in Marinobacter adhaerens HP15 around HP15_1602

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1600 and HP15_1601 are separated by 8 nucleotidesHP15_1601 and HP15_1602 are separated by 166 nucleotidesHP15_1602 and HP15_1603 are separated by 3 nucleotides HP15_1600: HP15_1600 - transglutaminase-like cysteine peptidase-like protein, at 1,697,388 to 1,698,050 _1600 HP15_1601: HP15_1601 - general secretion pathway protein C-like protein, at 1,698,059 to 1,698,709 _1601 HP15_1602: HP15_1602 - type II secretion system protein E, at 1,698,876 to 1,700,384 _1602 HP15_1603: HP15_1603 - general secretion pathway protein F, at 1,700,388 to 1,701,599 _1603 Position (kb) 1698 1699 1700 1701Strain fitness (log2 ratio) -2 -1 0 1at 1698.081 kb on + strandat 1698.089 kb on - strandat 1698.089 kb on - strandat 1698.091 kb on + strandat 1698.099 kb on - strandat 1698.122 kb on - strandat 1698.182 kb on - strand, within HP15_1601at 1698.195 kb on + strand, within HP15_1601at 1698.260 kb on - strand, within HP15_1601at 1698.304 kb on - strand, within HP15_1601at 1698.519 kb on - strand, within HP15_1601at 1698.582 kb on + strand, within HP15_1601at 1698.584 kb on + strand, within HP15_1601at 1698.670 kb on - strandat 1698.783 kb on + strandat 1698.789 kb on + strandat 1698.803 kb on - strandat 1699.018 kb on - strandat 1699.084 kb on + strand, within HP15_1602at 1699.092 kb on - strand, within HP15_1602at 1699.255 kb on - strand, within HP15_1602at 1699.403 kb on + strand, within HP15_1602at 1699.467 kb on - strand, within HP15_1602at 1699.544 kb on - strand, within HP15_1602at 1699.748 kb on - strand, within HP15_1602at 1699.803 kb on + strand, within HP15_1602at 1699.803 kb on + strand, within HP15_1602at 1700.011 kb on + strand, within HP15_1602at 1700.057 kb on + strand, within HP15_1602at 1700.219 kb on - strand, within HP15_1602at 1700.291 kb on - strandat 1700.534 kb on + strand, within HP15_1603at 1700.732 kb on - strand, within HP15_1603at 1700.732 kb on - strand, within HP15_1603at 1700.751 kb on - strand, within HP15_1603at 1700.950 kb on + strand, within HP15_1603at 1701.129 kb on - strand, within HP15_1603at 1701.193 kb on - strand, within HP15_1603

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,698,081 + -0.2
1,698,089 - -0.2
1,698,089 - -0.4
1,698,091 + -0.0
1,698,099 - +0.5
1,698,122 - -0.6
1,698,182 - HP15_1601 0.19 +0.3
1,698,195 + HP15_1601 0.21 -0.2
1,698,260 - HP15_1601 0.31 -0.0
1,698,304 - HP15_1601 0.38 -0.4
1,698,519 - HP15_1601 0.71 -0.4
1,698,582 + HP15_1601 0.80 +0.2
1,698,584 + HP15_1601 0.81 +0.1
1,698,670 - -0.1
1,698,783 + -0.1
1,698,789 + -0.2
1,698,803 - -0.0
1,699,018 - +0.7
1,699,084 + HP15_1602 0.14 -0.6
1,699,092 - HP15_1602 0.14 +0.1
1,699,255 - HP15_1602 0.25 -0.3
1,699,403 + HP15_1602 0.35 -2.3
1,699,467 - HP15_1602 0.39 -0.7
1,699,544 - HP15_1602 0.44 +0.6
1,699,748 - HP15_1602 0.58 -1.0
1,699,803 + HP15_1602 0.61 -0.5
1,699,803 + HP15_1602 0.61 -0.3
1,700,011 + HP15_1602 0.75 +1.0
1,700,057 + HP15_1602 0.78 -0.9
1,700,219 - HP15_1602 0.89 +0.3
1,700,291 - -2.1
1,700,534 + HP15_1603 0.12 -0.4
1,700,732 - HP15_1603 0.28 -0.1
1,700,732 - HP15_1603 0.28 -0.1
1,700,751 - HP15_1603 0.30 -0.3
1,700,950 + HP15_1603 0.46 +0.9
1,701,129 - HP15_1603 0.61 -0.4
1,701,193 - HP15_1603 0.66 -1.3

Or see this region's nucleotide sequence