Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1600 and HP15_1601 are separated by 8 nucleotides HP15_1601 and HP15_1602 are separated by 166 nucleotides HP15_1602 and HP15_1603 are separated by 3 nucleotides
HP15_1600: HP15_1600 - transglutaminase-like cysteine peptidase-like protein, at 1,697,388 to 1,698,050
_1600
HP15_1601: HP15_1601 - general secretion pathway protein C-like protein, at 1,698,059 to 1,698,709
_1601
HP15_1602: HP15_1602 - type II secretion system protein E, at 1,698,876 to 1,700,384
_1602
HP15_1603: HP15_1603 - general secretion pathway protein F, at 1,700,388 to 1,701,599
_1603
Position (kb)
1698
1699
1700
1701 Strain fitness (log2 ratio)
-2
-1
0
1 at 1698.081 kb on + strand at 1698.089 kb on - strand at 1698.089 kb on - strand at 1698.091 kb on + strand at 1698.099 kb on - strand at 1698.122 kb on - strand at 1698.182 kb on - strand, within HP15_1601 at 1698.195 kb on + strand, within HP15_1601 at 1698.260 kb on - strand, within HP15_1601 at 1698.304 kb on - strand, within HP15_1601 at 1698.519 kb on - strand, within HP15_1601 at 1698.582 kb on + strand, within HP15_1601 at 1698.584 kb on + strand, within HP15_1601 at 1698.670 kb on - strand at 1698.783 kb on + strand at 1698.789 kb on + strand at 1698.803 kb on - strand at 1699.018 kb on - strand at 1699.084 kb on + strand, within HP15_1602 at 1699.092 kb on - strand, within HP15_1602 at 1699.255 kb on - strand, within HP15_1602 at 1699.403 kb on + strand, within HP15_1602 at 1699.467 kb on - strand, within HP15_1602 at 1699.544 kb on - strand, within HP15_1602 at 1699.748 kb on - strand, within HP15_1602 at 1699.803 kb on + strand, within HP15_1602 at 1699.803 kb on + strand, within HP15_1602 at 1700.011 kb on + strand, within HP15_1602 at 1700.057 kb on + strand, within HP15_1602 at 1700.219 kb on - strand, within HP15_1602 at 1700.291 kb on - strand at 1700.534 kb on + strand, within HP15_1603 at 1700.732 kb on - strand, within HP15_1603 at 1700.732 kb on - strand, within HP15_1603 at 1700.751 kb on - strand, within HP15_1603 at 1700.950 kb on + strand, within HP15_1603 at 1701.129 kb on - strand, within HP15_1603 at 1701.193 kb on - strand, within HP15_1603
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 1,698,081 + -0.2 1,698,089 - -0.2 1,698,089 - -0.4 1,698,091 + -0.0 1,698,099 - +0.5 1,698,122 - -0.6 1,698,182 - HP15_1601 0.19 +0.3 1,698,195 + HP15_1601 0.21 -0.2 1,698,260 - HP15_1601 0.31 -0.0 1,698,304 - HP15_1601 0.38 -0.4 1,698,519 - HP15_1601 0.71 -0.4 1,698,582 + HP15_1601 0.80 +0.2 1,698,584 + HP15_1601 0.81 +0.1 1,698,670 - -0.1 1,698,783 + -0.1 1,698,789 + -0.2 1,698,803 - -0.0 1,699,018 - +0.7 1,699,084 + HP15_1602 0.14 -0.6 1,699,092 - HP15_1602 0.14 +0.1 1,699,255 - HP15_1602 0.25 -0.3 1,699,403 + HP15_1602 0.35 -2.3 1,699,467 - HP15_1602 0.39 -0.7 1,699,544 - HP15_1602 0.44 +0.6 1,699,748 - HP15_1602 0.58 -1.0 1,699,803 + HP15_1602 0.61 -0.5 1,699,803 + HP15_1602 0.61 -0.3 1,700,011 + HP15_1602 0.75 +1.0 1,700,057 + HP15_1602 0.78 -0.9 1,700,219 - HP15_1602 0.89 +0.3 1,700,291 - -2.1 1,700,534 + HP15_1603 0.12 -0.4 1,700,732 - HP15_1603 0.28 -0.1 1,700,732 - HP15_1603 0.28 -0.1 1,700,751 - HP15_1603 0.30 -0.3 1,700,950 + HP15_1603 0.46 +0.9 1,701,129 - HP15_1603 0.61 -0.4 1,701,193 - HP15_1603 0.66 -1.3
Or see this region's nucleotide sequence