Strain Fitness in Marinobacter adhaerens HP15 around HP15_1534

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1533 and HP15_1534 are separated by 122 nucleotidesHP15_1534 and HP15_1535 are separated by 73 nucleotides HP15_1533: HP15_1533 - chromosome segregation protein SMC, at 1,614,490 to 1,617,984 _1533 HP15_1534: HP15_1534 - cell division protein ZipA-like protein, at 1,618,107 to 1,619,120 _1534 HP15_1535: HP15_1535 - NAD-dependent DNA ligase, at 1,619,194 to 1,621,230 _1535 Position (kb) 1618 1619 1620Strain fitness (log2 ratio) -1 0 1at 1617.258 kb on + strand, within HP15_1533at 1617.408 kb on + strand, within HP15_1533at 1617.465 kb on + strand, within HP15_1533at 1617.540 kb on + strand, within HP15_1533at 1617.548 kb on - strand, within HP15_1533at 1617.604 kb on - strand, within HP15_1533at 1617.674 kb on - strandat 1617.797 kb on - strandat 1617.978 kb on + strandat 1617.987 kb on - strandat 1618.839 kb on + strand, within HP15_1534at 1618.893 kb on + strand, within HP15_1534at 1619.018 kb on + strand, within HP15_1534

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,617,258 + HP15_1533 0.79 -0.0
1,617,408 + HP15_1533 0.83 +0.1
1,617,465 + HP15_1533 0.85 +0.3
1,617,540 + HP15_1533 0.87 +0.2
1,617,548 - HP15_1533 0.87 -0.2
1,617,604 - HP15_1533 0.89 +0.4
1,617,674 - +0.2
1,617,797 - +0.1
1,617,978 + -1.1
1,617,987 - +0.7
1,618,839 + HP15_1534 0.72 -0.9
1,618,893 + HP15_1534 0.78 +1.7
1,619,018 + HP15_1534 0.90 -0.6

Or see this region's nucleotide sequence