Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1455 and HP15_1456 are separated by 230 nucleotides HP15_1456 and HP15_1457 are separated by 232 nucleotides HP15_1457 and HP15_1458 are separated by 73 nucleotides
HP15_1455: HP15_1455 - iron(III) ABC transporter, permease protein, at 1,530,464 to 1,532,077
_1455
HP15_1456: HP15_1456 - extracellular solute-binding protein, family 1, at 1,532,308 to 1,533,318
_1456
HP15_1457: HP15_1457 - HAD-superfamily subfamily IB, PSPase-like protein, at 1,533,551 to 1,533,790
_1457
HP15_1458: HP15_1458 - conserved hypothetical protein, at 1,533,864 to 1,534,457
_1458
Position (kb)
1532
1533
1534 Strain fitness (log2 ratio)
-2
-1
0
1 at 1531.727 kb on - strand, within HP15_1455 at 1531.766 kb on + strand, within HP15_1455 at 1531.767 kb on + strand, within HP15_1455 at 1531.947 kb on + strand at 1532.057 kb on + strand at 1532.057 kb on + strand at 1532.065 kb on - strand at 1532.065 kb on - strand at 1532.262 kb on + strand at 1532.371 kb on + strand at 1532.581 kb on + strand, within HP15_1456 at 1532.711 kb on + strand, within HP15_1456 at 1532.895 kb on + strand, within HP15_1456 at 1532.988 kb on - strand, within HP15_1456 at 1533.217 kb on - strand, within HP15_1456 at 1533.217 kb on - strand, within HP15_1456 at 1533.476 kb on + strand at 1533.533 kb on - strand at 1533.629 kb on + strand, within HP15_1457 at 1533.806 kb on + strand at 1533.825 kb on - strand at 1533.910 kb on + strand at 1533.918 kb on - strand at 1534.013 kb on - strand, within HP15_1458 at 1534.081 kb on - strand, within HP15_1458 at 1534.289 kb on + strand, within HP15_1458 at 1534.316 kb on + strand, within HP15_1458
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 1,531,727 - HP15_1455 0.78 -2.3 1,531,766 + HP15_1455 0.81 -0.7 1,531,767 + HP15_1455 0.81 -0.3 1,531,947 + -0.3 1,532,057 + +0.5 1,532,057 + -1.1 1,532,065 - -0.3 1,532,065 - -0.3 1,532,262 + +0.1 1,532,371 + -1.0 1,532,581 + HP15_1456 0.27 -1.3 1,532,711 + HP15_1456 0.40 -0.9 1,532,895 + HP15_1456 0.58 +0.2 1,532,988 - HP15_1456 0.67 +0.2 1,533,217 - HP15_1456 0.90 -0.5 1,533,217 - HP15_1456 0.90 -0.7 1,533,476 + -0.6 1,533,533 - +0.2 1,533,629 + HP15_1457 0.33 +0.3 1,533,806 + +0.2 1,533,825 - -1.0 1,533,910 + +0.1 1,533,918 - +1.3 1,534,013 - HP15_1458 0.25 +0.7 1,534,081 - HP15_1458 0.37 -0.7 1,534,289 + HP15_1458 0.72 +0.2 1,534,316 + HP15_1458 0.76 +0.1
Or see this region's nucleotide sequence