Strain Fitness in Marinobacter adhaerens HP15 around HP15_1437

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1435 and HP15_1436 are separated by 61 nucleotidesHP15_1436 and HP15_1437 are separated by 59 nucleotidesHP15_1437 and HP15_1438 are separated by 138 nucleotidesHP15_1438 and HP15_1439 overlap by 17 nucleotides HP15_1435: HP15_1435 - thioesterase superfamily protein, at 1,513,360 to 1,513,839 _1435 HP15_1436: HP15_1436 - protein containing DUF1330, at 1,513,901 to 1,514,191 _1436 HP15_1437: HP15_1437 - transcriptional regulator, LysR family protein, at 1,514,251 to 1,515,096 _1437 HP15_1438: HP15_1438 - NAD(P)H dehydrogenase (quinone), at 1,515,235 to 1,515,954 _1438 HP15_1439: HP15_1439 - CMP/dCMP deaminase, zinc-binding protein, at 1,515,938 to 1,516,417 _1439 Position (kb) 1514 1515 1516Strain fitness (log2 ratio) -1 0 1 2at 1513.417 kb on - strand, within HP15_1435at 1513.486 kb on - strand, within HP15_1435at 1513.626 kb on - strand, within HP15_1435at 1513.683 kb on + strand, within HP15_1435at 1513.691 kb on + strand, within HP15_1435at 1513.691 kb on - strand, within HP15_1435at 1513.691 kb on - strand, within HP15_1435at 1513.734 kb on + strand, within HP15_1435at 1513.759 kb on + strand, within HP15_1435at 1513.801 kb on - strandat 1513.912 kb on + strandat 1513.983 kb on - strand, within HP15_1436at 1514.052 kb on - strand, within HP15_1436at 1514.089 kb on + strand, within HP15_1436at 1514.155 kb on + strand, within HP15_1436at 1514.163 kb on - strandat 1514.216 kb on - strandat 1514.257 kb on + strandat 1514.340 kb on + strand, within HP15_1437at 1514.497 kb on - strand, within HP15_1437at 1514.667 kb on + strand, within HP15_1437at 1514.756 kb on + strand, within HP15_1437at 1514.788 kb on + strand, within HP15_1437at 1514.813 kb on - strand, within HP15_1437at 1515.428 kb on - strand, within HP15_1438at 1515.438 kb on + strand, within HP15_1438at 1515.438 kb on + strand, within HP15_1438at 1515.439 kb on - strand, within HP15_1438at 1515.446 kb on - strand, within HP15_1438at 1515.446 kb on - strand, within HP15_1438at 1515.487 kb on - strand, within HP15_1438at 1515.495 kb on - strand, within HP15_1438at 1515.510 kb on + strand, within HP15_1438at 1515.510 kb on + strand, within HP15_1438at 1515.518 kb on - strand, within HP15_1438at 1515.520 kb on + strand, within HP15_1438at 1515.545 kb on - strand, within HP15_1438at 1515.700 kb on + strand, within HP15_1438at 1515.756 kb on + strand, within HP15_1438at 1515.756 kb on + strand, within HP15_1438at 1515.756 kb on + strand, within HP15_1438at 1515.764 kb on - strand, within HP15_1438at 1515.781 kb on + strand, within HP15_1438at 1515.799 kb on - strand, within HP15_1438at 1515.802 kb on - strand, within HP15_1438at 1515.892 kb on - strandat 1515.892 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,513,417 - HP15_1435 0.12 +0.2
1,513,486 - HP15_1435 0.26 +0.4
1,513,626 - HP15_1435 0.55 -0.4
1,513,683 + HP15_1435 0.67 -0.3
1,513,691 + HP15_1435 0.69 +0.4
1,513,691 - HP15_1435 0.69 -0.0
1,513,691 - HP15_1435 0.69 -0.2
1,513,734 + HP15_1435 0.78 -0.2
1,513,759 + HP15_1435 0.83 +0.9
1,513,801 - +0.2
1,513,912 + +0.4
1,513,983 - HP15_1436 0.28 +0.7
1,514,052 - HP15_1436 0.52 +2.7
1,514,089 + HP15_1436 0.65 +0.3
1,514,155 + HP15_1436 0.87 +1.9
1,514,163 - +0.6
1,514,216 - +1.3
1,514,257 + -1.3
1,514,340 + HP15_1437 0.11 -0.4
1,514,497 - HP15_1437 0.29 -0.2
1,514,667 + HP15_1437 0.49 -0.8
1,514,756 + HP15_1437 0.60 -0.6
1,514,788 + HP15_1437 0.63 -0.3
1,514,813 - HP15_1437 0.66 +0.0
1,515,428 - HP15_1438 0.27 +0.7
1,515,438 + HP15_1438 0.28 +1.6
1,515,438 + HP15_1438 0.28 -0.0
1,515,439 - HP15_1438 0.28 -1.3
1,515,446 - HP15_1438 0.29 +0.3
1,515,446 - HP15_1438 0.29 +1.3
1,515,487 - HP15_1438 0.35 -0.3
1,515,495 - HP15_1438 0.36 +0.7
1,515,510 + HP15_1438 0.38 -0.3
1,515,510 + HP15_1438 0.38 +1.3
1,515,518 - HP15_1438 0.39 -0.2
1,515,520 + HP15_1438 0.40 -0.7
1,515,545 - HP15_1438 0.43 +0.1
1,515,700 + HP15_1438 0.65 -0.2
1,515,756 + HP15_1438 0.72 +0.7
1,515,756 + HP15_1438 0.72 -0.0
1,515,756 + HP15_1438 0.72 +0.8
1,515,764 - HP15_1438 0.73 +0.7
1,515,781 + HP15_1438 0.76 -0.1
1,515,799 - HP15_1438 0.78 +0.2
1,515,802 - HP15_1438 0.79 +0.3
1,515,892 - +0.1
1,515,892 - -1.5

Or see this region's nucleotide sequence